View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_20 (Length: 511)
Name: NF19878_low_20
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 252 - 492
Target Start/End: Complemental strand, 6855059 - 6854816
Alignment:
| Q |
252 |
gatatagtacaagcacaaaattcattagagttgtttcctttgttaattttgtataaataagggaagaaaatgatagagagaaccatctttgaacgttgta |
351 |
Q |
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| T |
6855059 |
gatatagtacaagcacaaaattcattagagttgtttcctttgttaattttgtataaataagggaagaaaatgatagagagaaccatctttgaacgttgta |
6854960 |
T |
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| Q |
352 |
gtatttcctaatgcgaagggaacccttggaggggatgttttctcctattcgatctatttcttaaatcaggtgttctttcttggaaattcaaatcaagctt |
451 |
Q |
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| T |
6854959 |
gtatttcctaatgtgaagggaacccttggaggggatgttttctcctattcgatctatttcttaaatcaggtgttctttcttggaaattcaaatcaagctt |
6854860 |
T |
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| Q |
452 |
cctaacatctaccac---ttagtcaagagctggcatgtgcttga |
492 |
Q |
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| T |
6854859 |
cctaacatctaccacttattagtcaagagctggtatgtgcttga |
6854816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 6855238 - 6855057
Alignment:
| Q |
18 |
agagtacaagagatcaaagttacctagaagcagaaggattgtaaaatttgcatatggtggtgttttatctggtggtgctgttcgagaaagagtcattcga |
117 |
Q |
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| T |
6855238 |
agagtacaagagatcaaagttacctagaagcagaaggattgtaaaatttgcatatggtggtgttttatctggtggtgctgttcgagaaagagtcattcga |
6855139 |
T |
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| Q |
118 |
gctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagatccaaaagacaaaggaaaaacaagctttgaagggat |
199 |
Q |
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| T |
6855138 |
gctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagatccaaaagacaaaggaaaaacaagctttgaagggat |
6855057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 66 - 301
Target Start/End: Original strand, 6823024 - 6823258
Alignment:
| Q |
66 |
tgcatatggtggtgttttatctggtggtgctgttcgagaaagagtcattcgagctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagatc |
165 |
Q |
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||||||| || || |||||| ||| || |||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||||| |||||||| |
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| T |
6823024 |
tgcatattgtagtattttatgtggaggcgctgttagagaaagaatcattcgagctttcttggttgaagagaaaaagatagtcaagaatgttctgaagatc |
6823123 |
T |
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| Q |
166 |
caaaagacaaaggaaaaacaagctttgaagggatgaattttatgaaaggagatacatatctttttggaggagttttaggtttgagtga-tatagtacaag |
264 |
Q |
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| T |
6823124 |
cgaaagagaaaggaaaaacaagctttgaagggatgaattttatgaaaggag--acatatcttttcagaggaattttaggtttgagtgattatagtacaag |
6823221 |
T |
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| Q |
265 |
cacaaaattcattagagttgtttcctttgttaatttt |
301 |
Q |
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| T |
6823222 |
cacaaaatttattagagttgttccctttgtgaatttt |
6823258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 118 - 286
Target Start/End: Original strand, 24245690 - 24245859
Alignment:
| Q |
118 |
gctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagatccaaaagacaaaggaaaaacaagctttgaagggatgaattttatgaaaggaga |
217 |
Q |
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||||||||||||||| |||||||||| |||||||| || |||||||||||||||||||||||||| |||||||||||||| | | ||| || ||| |||| |
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| T |
24245690 |
gctttcttggttgaagagcaaaagatcgtcaagaaagtcttgaagatccaaaagacaaaggaaaagcaagctttgaagggttaagtttcattaaacgaga |
24245789 |
T |
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| Q |
218 |
tacatatctttttggaggagttttaggtttgagtga-tatagtacaagcacaaaattcattagagttgtt |
286 |
Q |
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| T |
24245790 |
taaagatctttttggaggagttttaggtttgagtgattatagtaaaagcacaaaatttattagagctgtt |
24245859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 24244979 - 24245067
Alignment:
| Q |
19 |
gagtacaagagatcaaagttacctagaagcagaaggattgtaaaatttgcatatggtggtgttttatctggtggtgctgttcgagaaag |
107 |
Q |
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| T |
24244979 |
gagtacaagagatctaggttacctagaaacaggaggactgtgaatcgtgcctatggtggagttttatctggaggtgctgttagagaaag |
24245067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 492
Target Start/End: Original strand, 6823549 - 6823591
Alignment:
| Q |
450 |
ttcctaacatctaccacttagtcaagagctggcatgtgcttga |
492 |
Q |
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| T |
6823549 |
ttcctaacttctaccagttggtcaagagctggcatgtgcttga |
6823591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 2418914 - 2418844
Alignment:
| Q |
118 |
gctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagatccaaaagacaaaggaaaaacaagc |
188 |
Q |
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| T |
2418914 |
gctttccttgttgaagagcaaaaaatagttaagaaagttttgaagatccagaaaacaaaagaaaagcaagc |
2418844 |
T |
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