View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_21 (Length: 498)
Name: NF19878_low_21
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 3e-74; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 3752840 - 3752633
Alignment:
| Q |
14 |
attaaaaaatgtcaagatacatatagatacacataattttacaaactcattcttcaaattaaaccacatgattgatattttnnnnnnntattctgcattt |
113 |
Q |
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| T |
3752840 |
attaaaaaatgtcaagatacatatagatacacataattttacaaactcattcttcaaattaaaccacatgattaatatttaaaaaatatattttgcattt |
3752741 |
T |
|
| Q |
114 |
aatcatattaaactaaataactcatctcaaaaatattgaaaaatcattcataacacta-nnnnnnnactgcaaacactaattaaaagtatactctgaata |
212 |
Q |
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| T |
3752740 |
aatcatattaaactaaataactcatctcaaaaatattgaaaaatcattcataacactattttttttactgcaaacactaattaaaagtatactctgaata |
3752641 |
T |
|
| Q |
213 |
ttcaagtc |
220 |
Q |
| |
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||| |||| |
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|
| T |
3752640 |
ttcgagtc |
3752633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 277 - 392
Target Start/End: Complemental strand, 3752579 - 3752464
Alignment:
| Q |
277 |
caatgttttgtattaatttcttttcacaccagctttcttacctttttgtgtcgaagctttgttaacacattttttaaagacatgtcataaaatttgggct |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3752579 |
caatgttttgtattaatttcttttcacaccagctttcttacctttttgtgtcgaagctttgttaacacattttttaaagacatgtcataaaatttgggct |
3752480 |
T |
|
| Q |
377 |
cattttgagaggacca |
392 |
Q |
| |
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|||||||||||||||| |
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| T |
3752479 |
cattttgagaggacca |
3752464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 417 - 481
Target Start/End: Complemental strand, 3752467 - 3752403
Alignment:
| Q |
417 |
accaacaccaaaccctagtagtgacaacactaacagtaacagcagcagcagtacaaagtgttttc |
481 |
Q |
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| T |
3752467 |
accaacaccaaaccctagtagtgacaacactaacagtaacagcagcagcagtacaaagtgttttc |
3752403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 45 - 171
Target Start/End: Original strand, 25510687 - 25510815
Alignment:
| Q |
45 |
cataattttacaaactcattcttcaaattaaaccacatgattgatatttt-nnnnnnntat-tctgcatttaatcatattaaactaaataactcatctca |
142 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| ||||||| || ||| |||||||||| |||||||||| | |||||||||| |
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| T |
25510687 |
cataattttacaaactcattcttcaaattaaactacatgattaatattttaaaaaaaacatctcttcatttaatcagattaaactaacttactcatctca |
25510786 |
T |
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| Q |
143 |
aaaatattgaaaaatcattcataacacta |
171 |
Q |
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|||||||| | ||||| |||||||||||| |
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| T |
25510787 |
aaaatatttataaatcgttcataacacta |
25510815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 45 - 171
Target Start/End: Complemental strand, 31985988 - 31985860
Alignment:
| Q |
45 |
cataattttacaaactcattcttcaaattaaaccacatgattgatatttt-nnnnnnntat-tctgcatttaatcatattaaactaaataactcatctca |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||| || ||| |||||||||| |||||||||| | |||||||||| |
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| T |
31985988 |
cataattttacaaactcattcttcaaattaaactacatgattaatattttaaaaaaaacatctcttcatttaatcagattaaactaacttactcatctca |
31985889 |
T |
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| Q |
143 |
aaaatattgaaaaatcattcataacacta |
171 |
Q |
| |
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|||||||| | ||||| |||||||||||| |
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| T |
31985888 |
aaaatatttataaatcgttcataacacta |
31985860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 26492807 - 26492862
Alignment:
| Q |
109 |
catttaatcatattaaactaaataactcatctcaaaaatattgaaaaatcattcat |
164 |
Q |
| |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26492807 |
catttaatcagattaaactaaatgactcatctcaaaaatattgaaaaatcattcat |
26492862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 26492734 - 26492783
Alignment:
| Q |
40 |
atacacataattttacaaac---tcattcttcaaattaaaccacatgatt |
86 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
26492734 |
atacacataattttacaaacagatcattcttcaaattaaactacatgatt |
26492783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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