View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_24 (Length: 483)
Name: NF19878_low_24
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 17 - 464
Target Start/End: Original strand, 55478915 - 55479361
Alignment:
| Q |
17 |
ggacaaaggaaaaatggaaatcccaatacccaactttagagtcctgacttattattattcctattattactactcatgtcatgatatgtgcgatctcttt |
116 |
Q |
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| T |
55478915 |
ggacaaaggaaaaatggaaatcccaatacccaactttagagtcctgacttattattctt---attattactactcatgtcatgatatgtgcgatctcttt |
55479011 |
T |
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| Q |
117 |
aataatttcacttgaaattttactcttgagacttgattacatgttcttcaccataaacaactagtgaggctggcaaatagtacaagtttataacttacct |
216 |
Q |
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| T |
55479012 |
aataatttcacttgaaattttactcttgagacttgattacatgttcttcaccataaacaactagtgaggctggcaaatagtacaagtttataacttacct |
55479111 |
T |
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| Q |
217 |
ttatgagaatattcttgatctcgatatttctaccatgattacatgaagatcattttattcagatatcagtggtaattttgaattcaagttacatatgtag |
316 |
Q |
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| T |
55479112 |
ttatgagaatattcttgatctcgatatttctaccatgattacatgaagatcattttattcagatatcagtggtaattttgaattcaagttacatatgtag |
55479211 |
T |
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| Q |
317 |
--tttatacatgcaatgaaaattactcagtaaaacaaaacaaatcaatcatttaatatgaaatgtacactctacaacttggcttaagatggagaagagtt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
55479212 |
aatttatacatgcaatgaaaattactcagtaaaacaaaacaaatcaatcatttaatatgaaatgtagactctacaacttggcttaagatggagaagagtt |
55479311 |
T |
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| Q |
415 |
aataggatacatcaaaatcagacggttattatagttgtcatgtagtacgt |
464 |
Q |
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| T |
55479312 |
aataggatacatcaaaatcagacggttattatagttgtcatgtagtacgt |
55479361 |
T |
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