View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_26 (Length: 477)
Name: NF19878_low_26
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_26 |
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| [»] scaffold0004 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 49349528 - 49349988
Alignment:
| Q |
1 |
catttaaactatttttagaatagacttcacttggtcatttacaaaacttctaaccctacatgctctttttagaatttagaataactccacatgagacaat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49349528 |
catttaaactatttttagaatagacttcacttggtcatttacaaaacttctaaccctacatgctctttttagaatttagaataactccacatgagacaat |
49349627 |
T |
|
| Q |
101 |
ttttcaagttaatccattaacacaatccgctagatatatacaccatactgtatatcctacaagaaccnnnnnnngtctatcacacagagtattcagattg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
49349628 |
ttttcaagttaatccattaacacaatccgctagatatatacaccatactatatatcctacaagaaccaaaaaaagtctatcacacagagtattcagattg |
49349727 |
T |
|
| Q |
201 |
cataatcctgatcaaaccaaattgctgacatccacagtttagaaacgtggcatacaagcaacaacttccaactcagaaaaataatgttgtcccatataac |
300 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49349728 |
cataatcctgatcaaaccaaattgctcacatccacagttaagaaacgtggcatacaagcaacaacttccaactcagaaaaataatgttgtcccatataac |
49349827 |
T |
|
| Q |
301 |
tgaaagaaaaagataattgtttatagaacaataccctttagtttccaccaggcaaaaaggagggg-aaaaacgcctagaagttttagtctacaatgagca |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
49349828 |
tgaaagaaaaagataattgtttatagaacaataccctttagtttccaccaggcaaaaaggaggggaaaaaacgcctagaagttttagtctacaatgagca |
49349927 |
T |
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| Q |
400 |
cataaagcccttgaaagacaaatgaatccaattatacaaaattcaaatatccctcaattac |
460 |
Q |
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| T |
49349928 |
cataaagcccttgaaagacaaatgaatccaattatacaaaattcaaatatccctcaattac |
49349988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 180 - 460
Target Start/End: Original strand, 49361619 - 49361907
Alignment:
| Q |
180 |
tcacacagagtattcagattgcataatcctgatcaaaccaaattgctgacatccacagtttagaa----------acgtggcatacaagcaacaacttcc |
269 |
Q |
| |
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||||||| | ||| ||||||||| |||| ||||| || || |||||| ||||||||||||||||| |||||||| |||| ||||||||||| |
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| T |
49361619 |
tcacacaaactatccagattgcagaatcttgatcgaatcatattgctcacatccacagtttagaatccacatgaaacgtggcacacaaacaacaacttcc |
49361718 |
T |
|
| Q |
270 |
aactcagaaaaataatgttgtcccatataactgaaagaaaaagataattgtttatagaacaatacccttta-gtttccaccaggcaaaaaggagggg-aa |
367 |
Q |
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||||||||||||| || || ||| |||| || ||||||||||||||||||||||||| |||||||| || ||||||||||||||||| ||| | || |
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| T |
49361719 |
aactcagaaaaat---gtggtaccaaataaatgtaagaaaaagataattgtttatagaataataccctctaagtttccaccaggcaaaatggaagaataa |
49361815 |
T |
|
| Q |
368 |
aaacgcctagaagttttagtctacaatgagcacataaagcccttgaaagacaaatgaatccaattatacaaaattcaaatatccctcaattac |
460 |
Q |
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||| |||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
49361816 |
aaatgcctttaatttttagtctaca-tgagcacataaagcccttgaaagacaaatgaatccaattattcaaaatttaaatatccctcaattac |
49361907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 19030210 - 19030309
Alignment:
| Q |
180 |
tcacacagagtattcagattgcataatcctgatcaaaccaaattgctgacatccacagtttagaaacgtggcatacaagcaacaacttccaactcagaaa |
279 |
Q |
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||||||||||||| ||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19030210 |
tcacacagagtatccagattgcagaatcctgattaaaccaaattgctcacatccacagtttagaaacgtggcatacaagcaacaacttccaactcagaaa |
19030309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 19030052 - 19030112
Alignment:
| Q |
76 |
ttagaataactccacatgagacaatttttcaagttaatccattaacacaatccgctagata |
136 |
Q |
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| T |
19030052 |
ttagaataactccacataagacaatttttcatgttaatccattaaaacaatccactagata |
19030112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 228 - 458
Target Start/End: Original strand, 250072 - 250300
Alignment:
| Q |
228 |
acatccacagtttagaaacgtggcatacaagcaacaacttccaactcagaaaaataatgttgtcccatataactgaaagaaaaagataattgtttataga |
327 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
250072 |
acatccatagtttagaaacgtggcatacaagcaacaacttccaactcaaaaaaat---gtggtcccatataactgaaagaaaaagataattgtttataga |
250168 |
T |
|
| Q |
328 |
acaataccctttagtttccaccaggcaaaaaggaggggaaaa-acgcctagaagttttagtctacaatgagcacataaagcccttgaaagacaaatgaat |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
250169 |
acaataccctttagtttccaccaggcaaaaaggaggggaaaaaacgcctagaagttttagtctacaatgagcacataaagcccttgaaagacaaatgaat |
250268 |
T |
|
| Q |
427 |
ccaattatacaaaattcaaatatccctcaatt |
458 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
250269 |
ccaattatacaaaattcaaatatccctcaatt |
250300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 249782 - 249946
Alignment:
| Q |
1 |
catttaaactatttttagaatagacttcacttggtcatttacaaaacttctaaccctacatgctctttttagaatttagaataactccacatgagacaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
249782 |
catttaaactatttttagaatagacttcacttagtcatttacaaaacttctaaccctacatgctctttttagaatttagaataactccacatgagacaat |
249881 |
T |
|
| Q |
101 |
ttttcaagttaatccattaacacaatccgctagatatatacaccatactgtatatcctacaagaa |
165 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
249882 |
ttttcaagttaatcaactaacacaatccgctagatatatacaccatactatatatcctacaagaa |
249946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 42200000 - 42199941
Alignment:
| Q |
69 |
ttagaatttagaataactccacatgagacaatttttcaagttaatccattaacacaatcc |
128 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
42200000 |
ttagaatttagaacaactccacaggagacaatttttcaagttaatccattaacacaatcc |
42199941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 194 - 282
Target Start/End: Complemental strand, 42199894 - 42199791
Alignment:
| Q |
194 |
cagattgcataatcctgatcaaac-----caaattgctgacatccacagtttagaaac----------gtggcatacaagcaacaacttccaactcagaa |
278 |
Q |
| |
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||||||||| |||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42199894 |
cagattgcaaaatcctgatcaaaccaaaccaaattgctgacatccacggtttagaaaccacattaaatgtggcatacaagcaacaacttccaactcagaa |
42199795 |
T |
|
| Q |
279 |
aaat |
282 |
Q |
| |
|
|||| |
|
|
| T |
42199794 |
aaat |
42199791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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