View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19878_low_27 (Length: 477)
Name: NF19878_low_27
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_27 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 6507577 - 6507116
Alignment:
| Q |
1 |
tcacaatgttgttgatcctccttttgatgttcgaagaacacaaccaattaccaatcaaaatagcctctctcagcttgattctaattctcatttgaacaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6507577 |
tcacaatgttgttgatcctccttttgatgttcaaagaacacaaccaattaccaatcaaaataccctctctcagcttgattctaattctcatttgaacaat |
6507478 |
T |
|
| Q |
101 |
gacaatttgttattctctaatgattataataactcaggctatcttgaaagcattgttcctgttaattgcttcaaacctatttccaacacaaacaattcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6507477 |
gacaatttgttattctctaatgattataataactcaggctatcttgaaagcattgttcctgttaattgcttcaaacctatttccaacaccaacaattcaa |
6507378 |
T |
|
| Q |
201 |
actttgatgatcataggagtaatgcaagtgattcaagtgaacaccaaaatgttgttgattccattagcacaacaaacttcatgcatggtcaatcattttt |
300 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6507377 |
actttgatgatcatagtagtaatgcaagtgattcaagtgaacaccaaaatgttgttgattccatttgcacaacaaacttcatgcatggtcaatcattttt |
6507278 |
T |
|
| Q |
301 |
tgactacactccattctctcaagaagcatataacattaacacaagtgattatagtgaaggattatgggattgcaattacaatgaactttcagctattttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6507277 |
tgactacactccattctctcaagaagcatataacattaacacaagtaattatagtgaaggattatgggattgcaattacaatgaactttcagctattttt |
6507178 |
T |
|
| Q |
401 |
aaccaaccaccaaggagtgaaattccaagctatggactaatgacaactcaagatgtctcttc |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6507177 |
aaccaaccaccaaggagtgaaattccaagctatggactaatgacaactcaagatgtctcttc |
6507116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University