View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19878_low_28 (Length: 475)
Name: NF19878_low_28
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 290 - 460
Target Start/End: Complemental strand, 26930051 - 26929881
Alignment:
| Q |
290 |
ccattaccttaagaagttcattagcttcaaggttatcactgaaagcagtaacaagattgggggtaacaccagacttacccaccaattgtgtgctaagctt |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26930051 |
ccattaccttaagaagttcattagcttcaaggttatcactgaaagcagtaacaagattgggggtaacaccagacttacccaccaattgtgtgctaagctt |
26929952 |
T |
|
| Q |
390 |
tttccccaaactatgtgcataagacccaagttctttcctttctttcacactcaaactcggcacttccaatt |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26929951 |
tttccccaaactatgtgcataagacccaagttctttcctttctttcacactcaaactcggcacttccaatt |
26929881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 82 - 187
Target Start/End: Complemental strand, 26930259 - 26930154
Alignment:
| Q |
82 |
aaacatgaaaagaagaaaaaactaccacaagagacagttaccgagttgaacaaacaatctcaaaacaatactagcaacttgtatgaaagcatagcaaaat |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26930259 |
aaacatgaaaagaagaaaaaactaccacaagagacggttaccgagttgaacaaacaatctcaaaacaatactagcaacttgtatgaaagcatagcaaaat |
26930160 |
T |
|
| Q |
182 |
aatatg |
187 |
Q |
| |
|
|||||| |
|
|
| T |
26930159 |
aatatg |
26930154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 26930372 - 26930275
Alignment:
| Q |
1 |
atagctactaccacccgaaaggacaattgcatatgctannnnnnngcccagtgggactcgaaaaggacaattgcatatgctaaacatgaaaagaagaa |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26930372 |
atagctactaccacccgaaaggacaattgcatatgctatttttttgcccagtgagactcgaaaaggacaattgcatatgctaaacatgaaaagaagaa |
26930275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University