View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_29 (Length: 467)
Name: NF19878_low_29
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 1909373 - 1908968
Alignment:
| Q |
1 |
attattatttcatgtgctttggttggtgtcattttctttttaaatgttgtttgaatacgaattcagcaaacaactctactttgatatctttgtactttta |
100 |
Q |
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| T |
1909373 |
attattatttcatgtgctttggttggtgtcattttctttttaaatgttgtttgaatacgaattcagcaaacaactctactttgatatctttgtactttta |
1909274 |
T |
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| Q |
101 |
tgtgaaatatgtatggcagatagtcctttnnnnnnntgtatgccaaatagtgttgaaggaatttaataactnnnnnnnncgtattggtctatactcatga |
200 |
Q |
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| T |
1909273 |
tgtgaaatatgtatgccaaatagtcctctaaaaaaatgtatgccaaatagtgttgaaggaatttaataactaaaaaaaatgtattggtctatactcataa |
1909174 |
T |
|
| Q |
201 |
gcttgtttacattgttttttgagatgttatgactttaagactgtttgagtttatggttaaagtatcgtatactttctcatttttaagtgacgtttgttaa |
300 |
Q |
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| T |
1909173 |
gcttgtttacattgttttttgagatgttatgactttaagagtgtttgagtttatggttaaagtatcgtatactttttcatttttaagtgacgtttggtaa |
1909074 |
T |
|
| Q |
301 |
aaattgtaaaactaatgattttgatattcaataaattttaaacattttttaaaatagtagaagttgttatgtgtttgtttatcatgataaaaatcaattt |
400 |
Q |
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| T |
1909073 |
aaattgtaaaactaatgattttgatattcaataaattttaaacattttttaaaatagcagaagttgttatgtgtttgtttatcatgataaaaatcaattt |
1908974 |
T |
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| Q |
401 |
aaaaca |
406 |
Q |
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| T |
1908973 |
aaaaca |
1908968 |
T |
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