View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_31 (Length: 451)
Name: NF19878_low_31
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 20 - 440
Target Start/End: Original strand, 34432432 - 34432853
Alignment:
| Q |
20 |
aagccatgaagcatcaagtttttgcaccatgtgattgtgatcaaactgcagtgaccagctaactttgttctgtatactgacatgtaaacggttttacctg |
119 |
Q |
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| T |
34432432 |
aagccatgaagcatcaagtttttgcaccatgtgattgtgatcaaacggcagtgaccagctaactttgttctgtatactgacatgtaaacggttttacctg |
34432531 |
T |
|
| Q |
120 |
aacgtatcacagctccatgatgacgatgatcatcacttgcagaagagaaacatgcaggaattccaattgagtcttgcattgttgttgatgatgagtttat |
219 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34432532 |
aacgtatcacagctccatgatgatgatgatcatcacttgcagaagagaaacatgcaggaattccaattgagtcttgcattgttgttgatgatgagtttat |
34432631 |
T |
|
| Q |
220 |
tggagagnnnnnnnngtgagaagatgaaaaggatgtgaacagattggagtgagagggaatttaacatgaatttaaggagtaggagatgagagaagagann |
319 |
Q |
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| T |
34432632 |
tggagagaaaaaaaagtgagaagatgaaaaggatatgaacagattggagtgagagggaatttaacatgaatttaaggagtaggagatgagagaagaaatt |
34432731 |
T |
|
| Q |
320 |
nnnnnnatttaatagataaataaatttaggtgagttgggctcattagagtccggacatgtctcaaagctc-aaaaaacgtgttgacaaaaatacttgtag |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34432732 |
ttatttatttaatagataaataaatttaggtgagttgggctcattagagtccggacatgtctcaaagctcaaaaaaacgtgttgacaaaaatacttgtag |
34432831 |
T |
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| Q |
419 |
attacaccaacaaagtcttcat |
440 |
Q |
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|||||||||||||||||||||| |
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| T |
34432832 |
attacaccaacaaagtcttcat |
34432853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 43403365 - 43403447
Alignment:
| Q |
23 |
ccatgaagcatcaagtttttgcaccatgtgattgtgatcaaactgcagtgaccagctaactttgttctgtatactgacatgta |
105 |
Q |
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|||||||||| ||||||||||||||||||||| || ||||||| ||| ||| |||||| |||||||||||||||||||||||| |
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| T |
43403365 |
ccatgaagcaacaagtttttgcaccatgtgatggttatcaaacggcaatgatcagctacctttgttctgtatactgacatgta |
43403447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 26100166 - 26100060
Alignment:
| Q |
23 |
ccatgaagcatcaagtttttgcaccatgtgattgtgatcaaactgcagtgaccagctaactttgttctgtatactgacatgtaaacggttttacctgaac |
122 |
Q |
| |
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|||||||| | |||||||| |||| |||||||||| ||||||| ||||| || ||| | || |||||||||||||||||||||||||| ||||| ||| |
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| T |
26100166 |
ccatgaagaagcaagttttcgcactatgtgattgtaatcaaacgagagtgatcatctaccattcttctgtatactgacatgtaaacggttctacctcaac |
26100067 |
T |
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| Q |
123 |
gtatcac |
129 |
Q |
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|| |||| |
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| T |
26100066 |
gtgtcac |
26100060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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