View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19878_low_33 (Length: 448)

Name: NF19878_low_33
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19878_low_33
NF19878_low_33
[»] chr8 (3 HSPs)
chr8 (137-206)||(39322860-39322929)
chr8 (349-433)||(39323068-39323166)
chr8 (272-316)||(39322994-39323038)


Alignment Details
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 39322860 - 39322929
Alignment:
Q  137 gagaacaatatcacaagtaagtatgtgagatttgtcgatctatttatactaaatagaaaaacaatcaatt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39322860 gagaacaatatcacaagtaagtatgtgagatttgtcgatctatttatactaaatagaaaaacaatcaatt 39322929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 349 - 433
Target Start/End: Original strand, 39323068 - 39323166
Alignment:
Q  349 tccattaaatcccagtgggctttgttggtaacaac--------------cgtttttggtagcatatgagtctgactcgttgaatttagttcccatatcg 433  Q
    |||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39323068 tccattaaatcccagtgggctttgttggtaacaacaacaaacaaggttccgtttttggtagcatatgagtctgactcattgaatttagttcccatatcg 39323166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 316
Target Start/End: Original strand, 39322994 - 39323038
Alignment:
Q  272 gagtatatttaatcaaagtcttcgaaaattagaggttaacacatc 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  39322994 gagtatatttaatcaaagtcttcgaaaattagaggttaacacatc 39323038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University