View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_36 (Length: 438)
Name: NF19878_low_36
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 21405881 - 21405466
Alignment:
| Q |
1 |
aggcagccgtgtaataacggtaccagagtcgataatggcaccaccggaggagaaaatagaggatgagattggaagcttggttccaccaacgctgattccg |
100 |
Q |
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| T |
21405881 |
aggcagccgtgtaataacggtaccagagtcgataatggcaccaccggaggagaaaatagaggatgagattggaagcttggttccaccaacgctgattccg |
21405782 |
T |
|
| Q |
101 |
gcaatgtcaaggccgtagaaggaattgctccgggagacagtggagaaggaagtgtattttacatacttgttatcggaggcgccaaatgtgaggtggccaa |
200 |
Q |
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| T |
21405781 |
gcaatgtcaaggccgtagaaggaattgctccgggagacagtggagaaggaagtgtattttacgtacttgttatcggaggcgccaaatgtgaggtggccaa |
21405682 |
T |
|
| Q |
201 |
cgccgctagatgtggagggaagacaatacgagaaagttttttggtatttttgagatgtttgttggacgaatgagattggatgacgaccaaggcctaatag |
300 |
Q |
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| T |
21405681 |
cgccgctagatgtggagggaagacaatacgagaaagttttttggtatttttgagatgtttgttggacgaaagagattggatgacgaccaaggcctaatag |
21405582 |
T |
|
| Q |
301 |
gccggctgagccaccgaataagccttcattgtcttggccgcaaccaaataaaaaactatcaatggcatccgttggatttacgattagccgttcgcggctg |
400 |
Q |
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| T |
21405581 |
gccggctgagccaccgaataagccttcattgtcttggccgcaaccaaataaaaaactatcaatggcatctgttggatttacgattagccgttcgcggctg |
21405482 |
T |
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| Q |
401 |
aagtatccgactgaga |
416 |
Q |
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| T |
21405481 |
aagtatccgactgaga |
21405466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 2 - 306
Target Start/End: Complemental strand, 21379240 - 21378921
Alignment:
| Q |
2 |
ggcagccgtgtaataacggtaccagagtcgataatggcaccaccggaggagaaaatagaggatgagattggaagcttggttccaccaacgctgattccgg |
101 |
Q |
| |
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|||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| |||| |||||||||| ||| |||||||| |
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| T |
21379240 |
ggcagccgtgtaatgacggtaccagagtcaataatggcgccaccggaggagaaaatagaggatgatattgaaagcttggttttggcaatactgattccaa |
21379141 |
T |
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| Q |
102 |
caatgtcaaggccgtagaaggaattgctccgggagacagtggagaaggaagtgtattttacatacttg---------------ttatcggaggcgccaaa |
186 |
Q |
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| T |
21379140 |
cgatgtcaagaccgtagaaggaattactacgtgagattgtggataagggagtgtatttaacggtgttgttggccaccttataattatcggtagctccaaa |
21379041 |
T |
|
| Q |
187 |
tgtgaggtggccaacgccgctagatgtggagggaagacaatacgagaaagttttttggtatttttgagatgtttgttggacgaatgagattggatgacga |
286 |
Q |
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| T |
21379040 |
tgtgaggtggccaacaacgctggaagtagaaggaagacaataagagaaaattttgttgtattttttagcggtttgttggacaaaagagattggatgacga |
21378941 |
T |
|
| Q |
287 |
ccaaggcctaataggccggc |
306 |
Q |
| |
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||||||||||||| |||||| |
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| T |
21378940 |
ccaaggcctaatatgccggc |
21378921 |
T |
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