View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_37 (Length: 437)
Name: NF19878_low_37
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 14 - 344
Target Start/End: Original strand, 56222286 - 56222633
Alignment:
| Q |
14 |
agatgaagtataaaaaggggaaattggtatactccaattatatatataaggtgtgaacgaacgtgtgtagcatcgtggtcataaatgatggtagagtaat |
113 |
Q |
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| T |
56222286 |
agatgaagtataaaaaggggaaattggtatactccaattatatatataaggtgtgaacgaacgtgtgtagcatcgtggtcataaatgatggtagagtaat |
56222385 |
T |
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| Q |
114 |
aataaatgatgaaaaagaaagttggtgtgttagcagttgagagttga------------aataataataagtatgtactaatattattatactgtctata |
201 |
Q |
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| T |
56222386 |
aataaatgatgaaaaagaaagttggtgtgttagcagttgagagttgaaataataataataataataataagtatgtagtagtactattatactgtctata |
56222485 |
T |
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| Q |
202 |
-----gtattgtgttgattaggctgcctgcttgactcccttcacgccaagtaaaagggtcgtcaaccattttgagaagcctcttatatggcatgcaggga |
296 |
Q |
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| T |
56222486 |
gtgttgtgttgtgttgattaggctgcctgcttgactcccttcacgccaagtaaaagggtcgtcaaccattttgagaagcctcttatatggcatgcaggga |
56222585 |
T |
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| Q |
297 |
gccaggcaaacacaacattttgcatatatcattgcacaccaaaacgtt |
344 |
Q |
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| T |
56222586 |
gccaggcaaacacaacattttgcatatatcattgcacaccaaaacgtt |
56222633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 356 - 419
Target Start/End: Original strand, 56222703 - 56222763
Alignment:
| Q |
356 |
aatacaatacgtatatatgaatgaatagaaagagttaattatcagtagaagtagtgcatgtata |
419 |
Q |
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| T |
56222703 |
aatacaatacgtatatatgaatgaatggaaagagtta---atcagtagtagtagtgcatgtata |
56222763 |
T |
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