View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19878_low_38 (Length: 432)
Name: NF19878_low_38
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_38 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 31)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 24839545 - 24839960
Alignment:
| Q |
1 |
gagagcatttgttctactaccaaatctttcttaaatggtaccaaagtttcatcctttggataaaacactccacacttatcaacatattgaacataaggac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24839545 |
gagagcatttgttctactaccaaatctttcttaaatggtaccaaagtttcatcctttggataaaacactccacacttatcaacatattgaacataaggac |
24839644 |
T |
|
| Q |
101 |
gccaaataaaatcatcgatggctgagtctaatgccaacctcacattgtcaattttcaaggccttaacattatgccatctcaacaatacatggtctcgatt |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24839645 |
gccaaataaaatcatcgatgactgagtctaatgccaacctcacattgtcaattttcaaggccttaacattatgccacctcaacaatacatggtctcgatt |
24839744 |
T |
|
| Q |
201 |
attgctcaacttgggttgtggctgcaaatttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattgtacattaacgtccaacataaag |
300 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24839745 |
attgcccaacttgggttgtggctgcaaatttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattgtacattaacgtccagcataaag |
24839844 |
T |
|
| Q |
301 |
ggaaatttatcaggaaattttttgaaatcaacaactgtgttcttaaacaaccttaaatccttatataagctagccaaaacagcaggtgccaaagaaatag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24839845 |
ggaaatttatcaggaaattttttgaaatcaacaattgtgttcttaaacaaccttaaatcgttatataagctagccaaaacagcaggtgccaaagaaatag |
24839944 |
T |
|
| Q |
401 |
gattccctctagctag |
416 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
24839945 |
gattccctctagctag |
24839960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 19944264 - 19943851
Alignment:
| Q |
1 |
gagagcatttgttctactaccaaatctttcttaaatggtaccaaagtttcatcctttggataaaacactccacacttatcaacatattgaacataaggac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| | ||||||||||||||| |||||||||||||||||| |
|
|
| T |
19944264 |
gagagcatttgttctactaccaaatcttttttaaatggtaccaaagtttcatcatttggataatatactccacacttatcagcatattgaacataaggac |
19944165 |
T |
|
| Q |
101 |
gccaaataaaatcatcgatggctgagtctaatgccaacctcacattgtcaattttcaaggccttaacattatgccatctcaacaatacatggtctcgatt |
200 |
Q |
| |
|
| ||||||||||||| ||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
19944164 |
ggcaaataaaatcattgatagctgaatctaatgccaaccccacattgtcaattttcaaggccttaacattatgccacctcaacaatacatggtctccatt |
19944065 |
T |
|
| Q |
201 |
attgctcaacttgggttgtggctgcaaatttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattgtacattaacgtccaacataaag |
300 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19944064 |
attgatcaactttggttgtggctgcaaatttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattgtacattaacgtccaacataaag |
19943965 |
T |
|
| Q |
301 |
gg-aaatttatcaggaaattttttgaaatcaacaactgtgttcttaaacaaccttaaatccttatataagctagccaaaacagcaggtgccaaagaaata |
399 |
Q |
| |
|
|| ||||||||||||| ||||||| |||||||||| | ||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
19943964 |
ggaaaatttatcaggacattttttcaaatcaacaatttgtttcttaaacaaactcaaatccttatataagctagccaaaacagcaggtgccaaagccata |
19943865 |
T |
|
| Q |
400 |
ggattccctctagc |
413 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
19943864 |
ggaatccctctagc |
19943851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 19858619 - 19858207
Alignment:
| Q |
1 |
gagagcatttgttctactaccaaatctttcttaaatggtaccaaagtttcatcctttggataaaacactccacacttatcaacatattgaacataaggac |
100 |
Q |
| |
|
||||||||||||| | ||||||||||||| | ||| |||| || |||| || ||||||||||||| |||||||||||| ||||| ||| ||||||| |
|
|
| T |
19858619 |
gagagcatttgtttatcgaccaaatctttctaatatgatacccaaatttcgtcatttggataaaacagtccacacttatctgcatatctaacgtaaggac |
19858520 |
T |
|
| Q |
101 |
gccaaataaaatcatcgatggctgagtctaatgccaacctcacattgtcaattttcaaggccttaacattatgccatctcaacaatacatggtctcgatt |
200 |
Q |
| |
|
|||||||||||||||| || || ||||||||||||||| | |||||||||| ||||||||||||||| |||||||| || ||||||| | | |||| || |
|
|
| T |
19858519 |
gccaaataaaatcatcaatagccgagtctaatgccaacttaacattgtcaactttcaaggccttaaccttatgccacctaaacaataaaggttctccatg |
19858420 |
T |
|
| Q |
201 |
attgctcaacttgggttgtggctgcaaatttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattgtacattaacgtccaacataaag |
300 |
Q |
| |
|
||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| || |
|
|
| T |
19858419 |
cttgatcaacatgggttgtggctctaaatttttgaacctttcccaaacccaaacttgaagcaagtaaaagggtgattatacattaacgtccaacaccaat |
19858320 |
T |
|
| Q |
301 |
ggaaatttatcaggaaattttttgaaatcaacaactgtgttcttaaacaaccttaaatccttatataagctagccaaaacagcaggtgccaaagaaatag |
400 |
Q |
| |
|
|||||||||| | || ||||||| || ||||||| | ||||||||||| || ||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19858319 |
ggaaatttataacgacattttttcaattcaacaatttgtttcttaaacaaactcaaatcgttatataagctagccaaaacagcaggtgccaaagcgatag |
19858220 |
T |
|
| Q |
401 |
gattccctctagc |
413 |
Q |
| |
|
||| |||||||| |
|
|
| T |
19858219 |
tatttcctctagc |
19858207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 26647551 - 26647136
Alignment:
| Q |
1 |
gagagcatttgttctactaccaaatctttcttaaatggtaccaaagtttcatcctttggataaaacactccacacttatcaacatattgaacataaggac |
100 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||| || ||||||| ||||||||||||| | ||||||||||| ||||| ||||||||||| |
|
|
| T |
26647551 |
gagagcatttgttcatcaaccaaatctttcttaaatggtaccgaaatttcatcatttggataaaacaattcacacttatcagcatatctaacataaggac |
26647452 |
T |
|
| Q |
101 |
gccaaataaaatcatcgatggctgagtctaatgccaacctcacattgtcaattttcaaggccttaacattatgccatctcaacaatacatggtctcgatt |
200 |
Q |
| |
|
|||||| ||||||||| | || || |||| |||| || | ||| |||||||||||||| |||||| |||||||| || ||||| | | |||||| | |
|
|
| T |
26647451 |
gccaaagaaaatcatcaacagccgaatctagtgcccacttaacactgtcaattttcaagatcttaaccttatgccacctaaacaacaaagggtctccttg |
26647352 |
T |
|
| Q |
201 |
attgctcaacttgggttgtggctgcaaatttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattgtacattaacgtccaacataaag |
300 |
Q |
| |
|
||| |||| ||||||||||| || |||||||||||||||||||| ||||||| |||||||| ||||||||||||||| | | |||| ||| || |
|
|
| T |
26647351 |
gttgatcaaattgggttgtggttgtaaatttttgaacctttcccacacccaaatttgaaccaagtaaaagggtgattgaagagtaacttcc------aaa |
26647258 |
T |
|
| Q |
301 |
ggaaattt---------atcaggaaattttttgaaatcaacaactgtgttcttaaacaaccttaaatccttatataagctagccaaaacagcaggtgcca |
391 |
Q |
| |
|
||| || | ||||| || |||||| |||||||||| ||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
26647257 |
ggatatctatcaccaccatcagaaatttttttcaaatcaacaagtgttttcttaaacaaacttaaatccttatataagctagctaaaacagccggtgcca |
26647158 |
T |
|
| Q |
392 |
aagaaataggattccctctagc |
413 |
Q |
| |
|
||| ||| |||||||||||||| |
|
|
| T |
26647157 |
aagcaattggattccctctagc |
26647136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 2 - 413
Target Start/End: Complemental strand, 19854046 - 19853647
Alignment:
| Q |
2 |
agagcatttgttctactaccaaatctttcttaaatggtaccaaagtttcatcctttggataaaacactccacacttatcaacatattgaacataaggacg |
101 |
Q |
| |
|
|||||||||||| | |||||||| ||||||||||||||| | ||||||| || || ||||||| ||||||||||| | |||| |||||||||||| |
|
|
| T |
19854046 |
agagcatttgtttatccaccaaatcgttcttaaatggtacccgaatttcatcattcgggtaaaacattccacacttatgagcatagctaacataaggacg |
19853947 |
T |
|
| Q |
102 |
ccaaataaaatcatcgatggctgag---tctaatgccaacctcacattgtcaattttcaaggcc---ttaacattatgccatctcaacaatacatggtct |
195 |
Q |
| |
|
||||||||||||||| || | ||| ||||||||||||||||||| || ||||||||||| | | ||| |||||||| |||||||||||||||||| |
|
|
| T |
19853946 |
ccaaataaaatcatccattgttgatgaatctaatgccaacctcacatggttaattttcaagggcgcttcaaccttatgccacctcaacaatacatggtct |
19853847 |
T |
|
| Q |
196 |
cgattattgctcaacttgggttgtggctgcaaatttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattgtacattaacgtccaaca |
295 |
Q |
| |
|
| ||| ||| ||||||| |||||||||||||||||| |||| || ||||| |||||| |||| |||| ||||||||||||||| | ||| |||| |
|
|
| T |
19853846 |
ccattgttgatcaacttcggttgtggctgcaaatttatgaatctctcccacacccaagcttgtaccaagtaaaagggtgattgcagatt-------aaca |
19853754 |
T |
|
| Q |
296 |
taaagggaaatttatcaggaaattttttgaaatcaacaactgtgttcttaaacaaccttaaatccttatataagctagccaaaacagcaggtgccaaaga |
395 |
Q |
| |
|
| ||| ||||||||||||||||||||||| | | ||||||||||| || ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
19853753 |
tcaag-----------aggaaattttttgaaatcaacaatttttttcttaaacaaactcaaatcgttatataagctagccaaaacagcaggtgccaaagc |
19853665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 20 - 293
Target Start/End: Complemental strand, 26653679 - 26653407
Alignment:
| Q |
20 |
ccaaatctttcttaaatggtaccaaagtttcatcctttggataaaacactccacacttatcaacatattgaacataaggacgccaaataaaatcatcgat |
119 |
Q |
| |
|
||||||| ||||||||||||||| || |||||| ||||||||||||| ||||||||| | | |||| |||||| |||||||||| ||||||||| || |
|
|
| T |
26653679 |
ccaaatccttcttaaatggtacccaaatttcattatttggataaaacattccacacttgttaggatatctaacatatggacgccaaagaaaatcatcaat |
26653580 |
T |
|
| Q |
120 |
ggctgagtctaatgccaacctcacattgtcaattttcaaggccttaacattatgccatctcaacaatacatggtctcgattattgctcaacttgggttgt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| | |||| | |||| |||||||| ||||||||| ||||||| | ||||| |||||||||||||| |
|
|
| T |
26653579 |
tgctgagtctaatgccaacctcacattgtaaattat-aagggcataaccttatgccacctcaacaatgaatggtcttcactattgatcaacttgggttgt |
26653481 |
T |
|
| Q |
220 |
ggctgcaaatttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattgtacattaacgtccaa |
293 |
Q |
| |
|
|| ||||||||| ||||||| ||||| ||||||| |||||||| ||||||||||||| ||| |||||| ||||| |
|
|
| T |
26653480 |
ggttgcaaatttgtgaacctctcccacacccaaatttgaaccaagtaaaagggtgatcgtagattaacttccaa |
26653407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 20 - 278
Target Start/End: Original strand, 20015788 - 20016046
Alignment:
| Q |
20 |
ccaaatctttcttaaatggtaccaaagtttcatcctttggataaaacactccacacttatcaacatat-tgaacataaggacgccaaataaaatcatcga |
118 |
Q |
| |
|
|||||||||||||||||||||| ||| | |||| ||||||||||||| ||||||||||| ||||| |||| ||| |||||||||| ||||||||| | |
|
|
| T |
20015788 |
ccaaatctttcttaaatggtacaaaaaatgcatcatttggataaaacaaatcacacttatcagcatatctgaa-atatggacgccaaagaaaatcatcaa |
20015886 |
T |
|
| Q |
119 |
tggctgagtctaatgccaacctcacattgtcaattttcaaggccttaacattatgccatctcaacaatacatggtctcgattattgctcaacttgggttg |
218 |
Q |
| |
|
| |||||||||||||||| | | ||||||||||||||||| |||| ||| |||||||| || ||||||| | ||||| || |||| ||||| ||||||| |
|
|
| T |
20015887 |
tagctgagtctaatgccaccataacattgtcaattttcaaagcctgaaccttatgccacctaaacaataaagggtcttcatgattgatcaacatgggttg |
20015986 |
T |
|
| Q |
219 |
tggctgcaaatttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattg |
278 |
Q |
| |
|
||| || ||| |||||||||| ||||| ||||||| |||||||| |||| ||||||||| |
|
|
| T |
20015987 |
tggttgtaaaattttgaacctctcccacacccaaatttgaaccaaataaatgggtgattg |
20016046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 19956615 - 19956357
Alignment:
| Q |
20 |
ccaaatctttcttaaatggtaccaaagtttcatcctttggataaaacactccacacttatcaacatattgaacataaggacgccaaataaaatcatcgat |
119 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||| ||||||||||| | ||||| |||| | |||| ||||||| |||||||||| ||| ||||| || |
|
|
| T |
19956615 |
ccaaatccttcttaaatggtaccaaaatttcatcatttggataaaatagcccacatttatgagaatatcgaacatatggacgccaaagaaagtcatccat |
19956516 |
T |
|
| Q |
120 |
ggctgagtctaatgccaacctcacattgtcaattttcaaggccttaacattatgccatctcaacaatacatggtctcgattattgctcaacttgggttgt |
219 |
Q |
| |
|
|| ||||||||||||| ||| |||||||||| | |||||| |||||| |||||||| || ||||| | | ||| | || || |||| |||||||| |
|
|
| T |
19956515 |
agccgagtctaatgccatcctaacattgtcaactatcaagggcttaaccttatgccacctaaacaaaaaagggttcctatggttcaacaacatgggttgt |
19956416 |
T |
|
| Q |
220 |
ggctgcaaatttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattg |
278 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||| |||||||| ||||||||||||||| |
|
|
| T |
19956415 |
ggctgtaaatttttgaacctttcccacacccaaatttgaaccaagtaaaagggtgattg |
19956357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 17115244 - 17114992
Alignment:
| Q |
20 |
ccaaatctttcttaaatggtaccaaagtttcatcctttggataaaacactccacacttatcaacatattgaacataaggacgccaaataaaatcatcgat |
119 |
Q |
| |
|
|||||||||| || |||||||||||| ||||||| ||||||||||||| ||||||||||||| ||||| || || |||||||||| ||||||||||| |
|
|
| T |
17115244 |
ccaaatcttttttgaatggtaccaaaatttcatcatttggataaaacattccacacttatcagcatatctaatgtatggacgccaaagaaaatcatcgac |
17115145 |
T |
|
| Q |
120 |
ggctgagtctaatgccaacctcacattgtcaattttcaaggccttaacattatgccatctcaacaatacatggtctcgattattgctcaacttgggttgt |
219 |
Q |
| |
|
||| |||||||||| | | | |||||||||||||||| ||||| ||| ||||||| || ||||||| | |||||| || ||| ||||| ||| |||| |
|
|
| T |
17115144 |
agctaagtctaatgctagcttaacattgtcaattttcacggcctgaaccctatgccacctaaacaataaagggtctccatggttgatcaacatggattgt |
17115045 |
T |
|
| Q |
220 |
ggctgcaaatttttgaacctttcccaaacccaaacttgaaccaggtaaaaggg |
272 |
Q |
| |
|
|| || |||||||||||||| ||||| | ||||| |||||||| ||||||||| |
|
|
| T |
17115044 |
ggttgtaaatttttgaacctctcccacatccaaatttgaaccaagtaaaaggg |
17114992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 19951653 - 19951394
Alignment:
| Q |
19 |
accaaatctttcttaaatggtaccaaagtttcatcctttggataaaacactccacacttatcaacatattgaacataaggacgccaaataaaatcatcga |
118 |
Q |
| |
|
|||||||||||||||||||| |||||| |||| || || |||||||||| ||||||||||||| ||||| |||||| |||||||||||||||||| | | |
|
|
| T |
19951653 |
accaaatctttcttaaatggcaccaaaatttcttcattcggataaaacattccacacttatcagcatatctaacatatggacgccaaataaaatcaccca |
19951554 |
T |
|
| Q |
119 |
tggctgagtctaatgccaacctcacattgtcaattttcaaggccttaacattatgccatctcaacaatacatggtctcgattattgctcaacttgggttg |
218 |
Q |
| |
|
| |||| ||||||||| ||||| |||| || ||| |||||| |||||| |||||||| || ||||| | | |||||| || || || | ||||||| |
|
|
| T |
19951553 |
tagctgcgtctaatgctaacctaacatcgtggattctcaagggcttaaccttatgccacctaaacaaaaaagggtctccatggtttatcggcatgggttg |
19951454 |
T |
|
| Q |
219 |
tggctgcaaatttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattg |
278 |
Q |
| |
|
||| || |||||||| ||||| ||||||| ||||| |||||||| ||||||||||||||| |
|
|
| T |
19951453 |
tggttgtaaatttttaaacctctcccaaatccaaatttgaaccaagtaaaagggtgattg |
19951394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 29 - 278
Target Start/End: Complemental strand, 19838915 - 19838666
Alignment:
| Q |
29 |
tcttaaatggtaccaaagtttcatcctttggataaaacactccacacttatcaacatattgaacataaggacgccaaataaaatcatcgatggctgagtc |
128 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||| | ||||||||||| |||| ||||||| |||||||||| ||| ||||| || || ||||| |
|
|
| T |
19838915 |
tcttaaatggtaccaaaatttcatcatttggataaaacagttcacacttatcagaatatcgaacatatggacgccaaagaaagtcatccatagccgagtc |
19838816 |
T |
|
| Q |
129 |
taatgccaacctcacattgtcaattttcaaggccttaacattatgccatctcaacaatacatggtctcgattattgctcaacttgggttgtggctgcaaa |
228 |
Q |
| |
|
||| |||| ||| | |||||||||| ||||||||||||| |||||||| || ||||| | | |||| | | || |||| | |||||||| || ||| |
|
|
| T |
19838815 |
taaagccatcctaatattgtcaattatcaaggccttaactttatgccacctaaacaaaaaagggtccccctggttcaacaacattggttgtggttgtaaa |
19838716 |
T |
|
| Q |
229 |
tttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattg |
278 |
Q |
| |
|
||||||||||| ||||| ||||||| |||||||| ||||||||||||||| |
|
|
| T |
19838715 |
tttttgaacctctcccacacccaaatttgaaccaagtaaaagggtgattg |
19838666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 32 - 277
Target Start/End: Original strand, 20036202 - 20036447
Alignment:
| Q |
32 |
taaatggtaccaaagtttcatcctttggataaaacactccacacttatcaacatattgaacataaggacgccaaataaaatcatcgatggctgagtctaa |
131 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| || | || |||||||| |||| ||||||| |||||||||| ||| ||||| || || |||||||| |
|
|
| T |
20036202 |
taaatggtaccaaagtttcatcatttggataaagcagttcaaacttatcagaatatcgaacatatggacgccaaagaaagtcatccatagccgagtctaa |
20036301 |
T |
|
| Q |
132 |
tgccaacctcacattgtcaattttcaaggccttaacattatgccatctcaacaatacatggtctcgattattgctcaacttgggttgtggctgcaaattt |
231 |
Q |
| |
|
||||| ||| ||||||||||| |||||| |||||| |||||||| || ||||| | | |||| | || || |||| |||||||||| || |||||| |
|
|
| T |
20036302 |
tgccatcctaacattgtcaatcatcaagggcttaaccttatgccacctaaacaaaaaagggtccccatggttcaacaacatgggttgtggttgtaaattt |
20036401 |
T |
|
| Q |
232 |
ttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgatt |
277 |
Q |
| |
|
|||||||| ||||| ||||||| |||||||| |||||||||||||| |
|
|
| T |
20036402 |
ttgaacctctcccacacccaaatttgaaccaagtaaaagggtgatt |
20036447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 26652247 - 26652115
Alignment:
| Q |
19 |
accaaatctttcttaaatggtaccaaagtttcatcctttggataaaacactccacacttatcaacatattgaacataaggacgccaaataaaatcatcga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| | || ||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||| || |
|
|
| T |
26652247 |
accaaatctttcttaaatggtaccaaagttccgtcatttggataaaacacttcacacttatctgcataccgaacataaggacgccaaataaaatcattga |
26652148 |
T |
|
| Q |
119 |
tggctgagtctaatgccaacctcacattgtcaa |
151 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||| |
|
|
| T |
26652147 |
tagctgaatctaatgccaacctcacattgtcaa |
26652115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 34 - 413
Target Start/End: Complemental strand, 19812800 - 19812412
Alignment:
| Q |
34 |
aatggtaccaaagtttcatcctttggataaaacactccacacttatcaacatattgaacataaggacgccaaataaaatcatcgatggctgagtctaatg |
133 |
Q |
| |
|
||||||||| || ||||||| ||||||||||||| | |||||||||| ||||| |||||| |||||||||| ||||||||| | || |||||||| | |
|
|
| T |
19812800 |
aatggtaccgaaatttcatcatttggataaaacaatgcacacttatcggcatatctaacatatggacgccaaagaaaatcatccacagccgagtctaacg |
19812701 |
T |
|
| Q |
134 |
ccaacctcacattgtcaattttcaaggccttaacattatgccatctcaacaatacatggtctcgattattgctcaacttgg------gttgtggctgcaa |
227 |
Q |
| |
|
| ||||| |||||||||||| ||| || |||| |||||||| || ||||| | | |||| | || ||| ||||| | | ||||||| ||||| |
|
|
| T |
19812700 |
ctaacctaacattgtcaattgataagtccgtaaccttatgccacctaaacaaaaaagggtcgccatggttgatcaacatagtttgttgttgtggttgcaa |
19812601 |
T |
|
| Q |
228 |
atttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattgtacattaacgtccaacataaagggaaatttatca---------ggaaat |
318 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||| ||||||||||||||| | | ||| ||||| ||||||| ||||| ||| || |
|
|
| T |
19812600 |
atttttgaacctctcccaaacccaaatttgaaccaagtaaaagggtgattgaagagtaatctccaa------gggaaatctatcaccaccaacaggatat |
19812507 |
T |
|
| Q |
319 |
tttttgaaatcaacaactgtgttcttaaacaaccttaaatccttatataagctagccaaaacagcaggtgccaaagaaataggattccctctagc |
413 |
Q |
| |
|
||| |||||||||| ||| ||||||||||| |||||||| ||||||| ||||||||| ||||| |||||||||| |||||||| ||||||||| |
|
|
| T |
19812506 |
tttgacaaatcaacaattgttttcttaaacaaacttaaatctttatatatgctagccaagacagctggtgccaaagcaataggataccctctagc |
19812412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 50 - 277
Target Start/End: Complemental strand, 19849497 - 19849264
Alignment:
| Q |
50 |
catcctttggataaaacactccacacttatcaacatattgaacataaggacgccaaataaaatcatcgatggctgagtctaatgccaacctcacattgtc |
149 |
Q |
| |
|
|||| ||||||||||||| |||| | |||| | ||||| | |||| |||||||||| ||||||||| || || ||||||||||||||||| |||||||| |
|
|
| T |
19849497 |
catcatttggataaaacattccataattatgagcatatctagcatatggacgccaaagaaaatcatccatagccgagtctaatgccaacctaacattgtc |
19849398 |
T |
|
| Q |
150 |
aattttcaaggccttaacattatgccatctcaacaatacatggtctcgattattgctcaacttgggttgtggc------tgcaaatttttgaacctttcc |
243 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| ||||||| | | || | || ||| ||||| ||| ||||||| ||||||||||||||||| ||| |
|
|
| T |
19849397 |
aattttcaaggcctgaaccttatgccatctaaacaataaaggatccccatggttggtcaacatggtttgtggctgtggttgcaaatttttgaacctctcc |
19849298 |
T |
|
| Q |
244 |
caaacccaaacttgaaccaggtaaaagggtgatt |
277 |
Q |
| |
|
|| ||||||| |||||||| ||||||||||||| |
|
|
| T |
19849297 |
cacacccaaatttgaaccaaataaaagggtgatt |
19849264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 19832400 - 19832142
Alignment:
| Q |
20 |
ccaaatctttcttaaatggtaccaaagtttcatcctttggataaaacactccacacttatcaacatattgaacataaggacgccaaataaaatcatcgat |
119 |
Q |
| |
|
||||||| ||||||||||||||||| || |||| || |||||||||| ||||||||||| |||| ||||||| |||||||||| ||| ||||| | |
|
|
| T |
19832400 |
ccaaatccatcttaaatggtaccaaaattccatcattcggataaaacagctcacacttatcagaatatcgaacatatggacgccaaagaaagtcatcctt |
19832301 |
T |
|
| Q |
120 |
ggctgagtctaatgccaacctcacattgtcaattttcaaggccttaacattatgccatctcaacaatacatgg-tctcgattattgctcaacttgggttg |
218 |
Q |
| |
|
|| |||||||||||| ||| |||||||||||| |||||||||||| |||||||| || ||||| | |||| || | || || |||| ||||||| |
|
|
| T |
19832300 |
agccaagtctaatgccatcctaacattgtcaattaccaaggccttaaccttatgccacctaaacaa-aaatggttcccctttgttcaacaacatgggttg |
19832202 |
T |
|
| Q |
219 |
tggctgcaaatttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattg |
278 |
Q |
| |
|
||| || |||||||||||||| ||||| ||||||| |||||||| ||||||||||||||| |
|
|
| T |
19832201 |
tggatgtaaatttttgaacctctcccacacccaaatttgaaccaagtaaaagggtgattg |
19832142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 413
Target Start/End: Complemental strand, 20046651 - 20046255
Alignment:
| Q |
20 |
ccaaatctttcttaaatggtaccaaagtttcatcctttggataaaacactccacacttatcaacatattgaacataaggacgccaaataaaatcatcgat |
119 |
Q |
| |
|
||||||| ||||||||||||||| || |||| | ||||||||||| | ||||||||| ||| |||| |||||| |||||||||| ||||||||||| |
|
|
| T |
20046651 |
ccaaatccttcttaaatggtacccaaatttcgttatttggataaaaaattccacacttgtcaggatatctaacatatggacgccaaagaaaatcatcgac |
20046552 |
T |
|
| Q |
120 |
ggctgagtctaatgccaacctcacattgtcaattttcaaggccttaacattatgccatctcaacaatacatggtctcgattattgctcaacttgggttgt |
219 |
Q |
| |
|
| |||||||||||||||| | ||||| ||||||||||| || | ||| |||||||| || ||||||| | |||| | |||| ||||| |||||||| |
|
|
| T |
20046551 |
agttgagtctaatgccaacttaacattatcaattttcaatgcgtgaaccttatgccacctaaacaataaagggtcgctgggattgatcaacatgggttgt |
20046452 |
T |
|
| Q |
220 |
ggctgcaaatttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattgtacattaacgtccaacataaagggaaatttatca------- |
312 |
Q |
| |
|
|| | || ||| |||||| ||||| |||||||||||||||| |||||||||||| | | | ||| | ||||| |||||| ||||| |
|
|
| T |
20046451 |
ggtggtaattttgcgaacctctcccacacccaaacttgaaccaaataaaagggtgatagaatagtaa-attcaaca-----ggaaatctatcaccaccaa |
20046358 |
T |
|
| Q |
313 |
--ggaaattttttgaaatcaacaactgtgttcttaaacaaccttaaatccttatataagctagccaaaacagcaggtgccaaagaaataggattccctct |
410 |
Q |
| |
|
||| ||||| | ||||| || |||||||||||| || |||||||||||||||| |||| ||||||||||||||||||||| ||| ||||| ||||| |
|
|
| T |
20046357 |
ccggatattttaacagatcaataattgtgttcttaaataaacttaaatccttatatatgctacccaaaacagcaggtgccaaagcaattggatttcctct |
20046258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 19819091 - 19818827
Alignment:
| Q |
20 |
ccaaatctttcttaaatggtaccaaagtttcatcctttggataaaacactccacacttatcaacatattgaacataaggacgccaaataaaatcatcgat |
119 |
Q |
| |
|
||||||| ||||||||||||||||| || |||| || |||||||||| ||||||||||| |||| ||||||| |||||||||| ||| ||||| | |
|
|
| T |
19819091 |
ccaaatccatcttaaatggtaccaaaattccatcattcggataaaacagctcacacttatcagaatatcgaacatatggacgccaaagaaagtcatcctt |
19818992 |
T |
|
| Q |
120 |
ggctgagtctaatgccaacctcacattgtcaattttcaaggccttaacattatgccatctcaacaatacatggtctcgattattgctcaacttgggttgt |
219 |
Q |
| |
|
|| ||||||||||||| ||| ||||||||||||| |||||||| ||||| |||||| || ||||| | | |||||| || || ||||| ||| |||| |
|
|
| T |
19818991 |
agccgagtctaatgccatcctaacattgtcaatttccaaggcctgaacatcatgccacctaaacaaaaaagggtctccatggtttatcaacatggtttgt |
19818892 |
T |
|
| Q |
220 |
ggc------tgcaaatttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattg |
278 |
Q |
| |
|
||| |||| |||||||||||| ||||| ||||| | |||||||| |||||||||||||| |
|
|
| T |
19818891 |
ggcagtggttgcatatttttgaacctctcccacacccatatttgaaccaaataaaagggtgattg |
19818827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 297 - 411
Target Start/End: Complemental strand, 19971862 - 19971748
Alignment:
| Q |
297 |
aaagggaaatttatcaggaaattttttgaaatcaacaactgtgttcttaaacaaccttaaatccttatataagctagccaaaacagcaggtgccaaagaa |
396 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||| | |||||||||| || ||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
19971862 |
aaagggaaatttatcaggatattttttcaaatcaacaatttgtttcttaaacagagttcaatccttatataagctagccaaaacagttggtgccaaagca |
19971763 |
T |
|
| Q |
397 |
ataggattccctcta |
411 |
Q |
| |
|
|||| ||| |||||| |
|
|
| T |
19971762 |
atagtattgcctcta |
19971748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 252 - 350
Target Start/End: Complemental strand, 26652116 - 26652015
Alignment:
| Q |
252 |
aacttgaaccaggtaaaagggtgattgta---cattaacgtccaacataaagggaaatttatcaggaaattttttgaaatcaacaactgtgttcttaaac |
348 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||| ||||||| |||| ||||||||||||| ||||||| |||||||||| ||| ||||||||| |
|
|
| T |
26652116 |
aacttgaaccaagtaaaagggtgattgtagtacattaacctccaacaacaaggaaaatttatcaggacattttttcaaatcaacaagtgttttcttaaac |
26652017 |
T |
|
| Q |
349 |
aa |
350 |
Q |
| |
|
|| |
|
|
| T |
26652016 |
aa |
26652015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 39 - 278
Target Start/End: Complemental strand, 19990040 - 19989795
Alignment:
| Q |
39 |
taccaaagtttcatcctttggataaaacactccacacttatcaacatattgaacataaggacgccaaataaaatcatcgatggctgagtctaatgccaac |
138 |
Q |
| |
|
|||| ||||| |||| ||||||||||||| | ||||||| ||| || || |||||| |||||||||| ||||| || | ||||||| |||| ||||| |
|
|
| T |
19990040 |
tacccaagttccatcatttggataaaacagttcacacttctcagcaaatctaacatatggacgccaaagaaaatgattctttgctgagtttaattccaac |
19989941 |
T |
|
| Q |
139 |
ctcacattgtcaattttcaag------gccttaacattatgccatctcaacaatacatggtctcgattattgctcaacttgggttgtggctgcaaatttt |
232 |
Q |
| |
|
|| |||||||||| || ||| || | |||||||||| || ||||| | | ||||| || ||| ||| | |||||||||| || ||||||| |
|
|
| T |
19989940 |
ctaacattgtcaacatttaagttctcactctcagcattatgccacctaaacaaaaaagggtcttcatagttgatcagcatgggttgtggttgtaaatttt |
19989841 |
T |
|
| Q |
233 |
tgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattg |
278 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19989840 |
tgaacctctcccaaacccaaacttgaaccaagtaaaagggtgattg |
19989795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 325 - 413
Target Start/End: Original strand, 20016096 - 20016184
Alignment:
| Q |
325 |
aaatcaacaactgtgttcttaaacaaccttaaatccttatataagctagccaaaacagcaggtgccaaagaaataggattccctctagc |
413 |
Q |
| |
|
|||||||||| ||| ||||||||||| |||||||| ||||||| ||||||||| ||||| |||||||||| ||||||||| | |||||| |
|
|
| T |
20016096 |
aaatcaacaattgttttcttaaacaaacttaaatctttatatatgctagccaagacagctggtgccaaagcaataggatttcgtctagc |
20016184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 340 - 413
Target Start/End: Complemental strand, 19818762 - 19818689
Alignment:
| Q |
340 |
ttcttaaacaaccttaaatccttatataagctagccaaaacagcaggtgccaaagaaataggattccctctagc |
413 |
Q |
| |
|
||||||||||| |||||||| ||||| | | ||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
19818762 |
ttcttaaacaaacttaaatctttataaatgttagccaaaacagccggtgccaaagcaataggattccctctagc |
19818689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 413
Target Start/End: Original strand, 20036498 - 20036586
Alignment:
| Q |
325 |
aaatcaacaactgtgttcttaaacaaccttaaatccttatataagctagccaaaacagcaggtgccaaagaaataggattccctctagc |
413 |
Q |
| |
|
|||||||||| ||| ||||||||||| ||||||||||||||| ||||| |||||||||||||| |||| |||| |||| |||||||| |
|
|
| T |
20036498 |
aaatcaacaattgttttcttaaacaaagttaaatccttatatagactagctaaaacagcaggtgctaaagcaatacgatttcctctagc |
20036586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 340 - 413
Target Start/End: Complemental strand, 19956292 - 19956219
Alignment:
| Q |
340 |
ttcttaaacaaccttaaatccttatataagctagccaaaacagcaggtgccaaagaaataggattccctctagc |
413 |
Q |
| |
|
||||| ||||| ||||||||||||||| |||||| |||||||| |||||||||| ||||||||| |||||||| |
|
|
| T |
19956292 |
ttctttaacaaagttaaatccttatatatgctagctaaaacagctggtgccaaagcaataggatttcctctagc |
19956219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 325 - 413
Target Start/End: Complemental strand, 19951344 - 19951256
Alignment:
| Q |
325 |
aaatcaacaactgtgttcttaaacaaccttaaatccttatataagctagccaaaacagcaggtgccaaagaaataggattccctctagc |
413 |
Q |
| |
|
|||||||||| || || |||||||| ||||||||||||||| |||||| |||||||| || ||||||| ||||||||| |||||||| |
|
|
| T |
19951344 |
aaatcaacaattgcttttttaaacaaagttaaatccttatatatgctagctaaaacagctggagccaaagcaataggatttcctctagc |
19951256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 413
Target Start/End: Complemental strand, 19849198 - 19849125
Alignment:
| Q |
340 |
ttcttaaacaaccttaaatccttatataagctagccaaaacagcaggtgccaaagaaataggattccctctagc |
413 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||| |||||||||||||| |||| |||| |||| |||||||| |
|
|
| T |
19849198 |
ttcttaaacaaagttaaatccttatatagactagctaaaacagcaggtgctaaagcaatacgatttcctctagc |
19849125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 413
Target Start/End: Complemental strand, 26653368 - 26653284
Alignment:
| Q |
329 |
caacaactgtgttcttaaacaaccttaaatccttatataagctagccaaaacagcaggtgccaaagaaataggattccctctagc |
413 |
Q |
| |
|
|||||| ||| ||||||||||| | || |||||||||| ||||| |||||||| |||||||||| ||||||||| |||||||| |
|
|
| T |
26653368 |
caacaattgttttcttaaacaaagtcaagtccttatatatactagctaaaacagctggtgccaaagcaataggatttcctctagc |
26653284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 20033923 - 20033991
Alignment:
| Q |
19 |
accaaatctttcttaaatggtaccaaagtttcatcctttggataaaacactccacacttatcaacatat |
87 |
Q |
| |
|
|||||||| |||||||||||||| || ||||||| || |||||||||| || |||||||||| ||||| |
|
|
| T |
20033923 |
accaaatcattcttaaatggtactgaaatttcatcattcggataaaacagtctacacttatcagcatat |
20033991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 19989716 - 19989657
Alignment:
| Q |
354 |
taaatccttatataagctagccaaaacagcaggtgccaaagaaataggattccctctagc |
413 |
Q |
| |
|
|||||||||||| || ||||||||||| |||||||| || | ||||||||| |||||||| |
|
|
| T |
19989716 |
taaatccttatacaaactagccaaaactgcaggtgctaatgcaataggatttcctctagc |
19989657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 30914971 - 30914919
Alignment:
| Q |
223 |
tgcaaatttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtga |
275 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| ||| |||| || ||||||||| |
|
|
| T |
30914971 |
tgcaaattttttaacctctcccaaacccaaatttgtaccaagtcaaagggtga |
30914919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 20 - 309
Target Start/End: Complemental strand, 11544601 - 11544312
Alignment:
| Q |
20 |
ccaaatctttcttaaatggtaccaaagtttcatcctttggataaaacactccacacttatcaacatattgaacataaggacgccaaataaaatcatcgat |
119 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||| ||||||||||||| | || ||||||| ||||||||||||| || ||||||| ||||||||| | |
|
|
| T |
11544601 |
ccaaatccttcttaagcggtaccaaagtttcatcatttggataaaacatttcaaacttatcggcatattgaacatatgggcgccaaagaaaatcatcctt |
11544502 |
T |
|
| Q |
120 |
ggctgagtctaatgccaacctcacattgtcaattttcaaggccttaacattatgccatctcaacaatacatggtctcgattattgctcaacttgggttgt |
219 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||| ||||| |||||| |||| || ||||||||||| ||| ||| |||||||||||| | |
|
|
| T |
11544501 |
agctgaatctaatgccaacctcacattatcaattttcaagggtttaaccaaatgccacctcatcagtacatggtctccattgttgatcaacttgggtttt |
11544402 |
T |
|
| Q |
220 |
ggctgcaaatttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattgtacattaacgtccaacataaagggaaattta |
309 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||| |||| ||| |||||| | || ||||||||| |
|
|
| T |
11544401 |
ggttgcaaatttttgaacctctcccaaacccaaacttgaaccaagtaaatgggtgattgcacatcaacctccaacttcaatggaaattta |
11544312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 47 - 413
Target Start/End: Original strand, 22689290 - 22689638
Alignment:
| Q |
47 |
tttcatcctttggataaaacactccacacttatcaacatattgaacataaggacgccaaataaaatcatcgatggctgagtctaatgccaacctcacatt |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| | | ||| || || | |||||||||||| |
|
|
| T |
22689290 |
tttcatcctttggataaaacactccacacttatcagcatatctaacataaggacgccaaataaaattatcaacagttgaatccaacgtcaacctcacatt |
22689389 |
T |
|
| Q |
147 |
gtcaattttcaaggccttaacattatgccatctcaacaatacatggtctcgattattgctcaacttgggttgtggctgcaaatttttgaacctttcccaa |
246 |
Q |
| |
|
|||||||||||| || ||||| |||||| |||| |||||||||||| | ||||| ||||| |||| |||| ||||||||||||||||| ||||| |
|
|
| T |
22689390 |
gtcaattttcaaagcattaaccaaatgccacttcaataatacatggtcttcactattgatcaacatgggccgtggttgcaaatttttgaacctctcccac |
22689489 |
T |
|
| Q |
247 |
acccaaacttgaaccaggtaaaagggtgattgtacattaacgtccaacataaagggaaatttatcaggaaattttttgaaatcaacaactgtgttcttaa |
346 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| | |||||| || | ||||| |||||||||||||||||| | ||||||| |
|
|
| T |
22689490 |
acccaaacttgaaccaagtaaaagggtgattgcagattaacatc------------------aacaggacattttttgaaatcaacaatttgtttcttaa |
22689571 |
T |
|
| Q |
347 |
acaaccttaaatccttatataagctagccaaaacagcaggtgccaaagaaataggattccctctagc |
413 |
Q |
| |
|
|||| || ||||||||||||| |||||||||||||||||||||||||| ||||| ||| |||||||| |
|
|
| T |
22689572 |
acaaactcaaatccttatatatgctagccaaaacagcaggtgccaaagcaatagtattgcctctagc |
22689638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 325 - 413
Target Start/End: Original strand, 22651788 - 22651876
Alignment:
| Q |
325 |
aaatcaacaactgtgttcttaaacaaccttaaatccttatataagctagccaaaacagcaggtgccaaagaaataggattccctctagc |
413 |
Q |
| |
|
|||||||||| ||| ||||||||||| ||||||||||||| | ||||||||||||||| ||||| |||| ||||||||| |||||||| |
|
|
| T |
22651788 |
aaatcaacaattgttttcttaaacaaagttaaatccttatacatgctagccaaaacagctggtgcaaaagcaataggatttcctctagc |
22651876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 223 - 309
Target Start/End: Original strand, 11563918 - 11564004
Alignment:
| Q |
223 |
tgcaaatttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattgtacattaacgtccaacataaagggaaattta |
309 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| ||||| ||||| |||||||||||||||||| |||| | | || ||||||||| |
|
|
| T |
11563918 |
tgcaaatttttgaacctctcccaaagccaaactttaaccaagtaaatgggtgattgtacattaacctccaccttcaatggaaattta |
11564004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 22655903 - 22655985
Alignment:
| Q |
20 |
ccaaatctttcttaaatggtaccaaagtttcatcctttggataaaacactccacacttatcaacatattgaacataaggacgc |
102 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||| || |||||||||| | ||||||||| |||| ||||||| |||||| |
|
|
| T |
22655903 |
ccaaatccttcttaaatggtaccaaaatttcatcattaggataaaacagctcgcacttatcagaatatcgaacatatggacgc |
22655985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 4e-51; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 9815565 - 9815307
Alignment:
| Q |
20 |
ccaaatctttcttaaatggtaccaaagtttcatcctttggataaaacactccacacttatcaacatattgaacataaggacgccaaataaaatcatcgat |
119 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||| || || |||||| ||||| || ||| |||||||||| ||||||||| || |
|
|
| T |
9815565 |
ccaaatctttcttaaatggtaccaaaagcgcatcatttggataaaacacaccgcagttatcagcatatctaaaatatggacgccaaagaaaatcatccat |
9815466 |
T |
|
| Q |
120 |
ggctgagtctaatgccaacctcacattgtcaattttcaaggccttaacattatgccatctcaacaatacatggtctcgattattgctcaacttgggttgt |
219 |
Q |
| |
|
|| ||||||||||||| | | |||||||||||||||||||||| ||| ||||| || || ||||||| | |||||| | |||| ||||| |||||| | |
|
|
| T |
9815465 |
agccgagtctaatgccagcttaacattgtcaattttcaaggcctgaaccttatgtcacctaaacaataaagggtctccgtgattgatcaacatgggttct |
9815366 |
T |
|
| Q |
220 |
ggctgcaaatttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattg |
278 |
Q |
| |
|
||||| ||||||| |||||| ||||| ||||||| |||||||| ||||||||||||||| |
|
|
| T |
9815365 |
ggctgtaaattttggaacctctcccacacccaaatttgaaccaagtaaaagggtgattg |
9815307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 278
Target Start/End: Original strand, 26354514 - 26354772
Alignment:
| Q |
20 |
ccaaatctttcttaaatggtaccaaagtttcatcctttggataaaacactccacacttatcaacatattgaacataaggacgccaaataaaatcatcgat |
119 |
Q |
| |
|
||||||||||||||||||||||| || || |||| ||||||||||| || ||||| | ||| ||||| || ||| |||||||||| |||||||| ||| |
|
|
| T |
26354514 |
ccaaatctttcttaaatggtaccgaaattgcatcatttggataaaatacaccacattcatctgcatatctaaaatatggacgccaaagaaaatcattgat |
26354613 |
T |
|
| Q |
120 |
ggctgagtctaatgccaacctcacattgtcaattttcaaggccttaacattatgccatctcaacaatacatggtctcgattattgctcaacttgggttgt |
219 |
Q |
| |
|
|| |||||||| ||| | | |||||||||||||||||||| | || |||||||||| ||||||| | |||||| | ||| ||||| ||||||| |
|
|
| T |
26354614 |
agccaagtctaattccagcttaacattgtcaattttcaaggcttgtaccctatgccatctaaacaataaagggtctccacggttgatcaacatgggttgc |
26354713 |
T |
|
| Q |
220 |
ggctgcaaatttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattg |
278 |
Q |
| |
|
|| || || ||||||||||| ||||| ||||||| |||||||| |||||| |||||||| |
|
|
| T |
26354714 |
ggttgtaattttttgaacctctcccacacccaaatttgaaccaagtaaaacggtgattg |
26354772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 413
Target Start/End: Original strand, 26354822 - 26354910
Alignment:
| Q |
325 |
aaatcaacaactgtgttcttaaacaaccttaaatccttatataagctagccaaaacagcaggtgccaaagaaataggattccctctagc |
413 |
Q |
| |
|
|||||||||| || |||||||||| |||||||||||||||| |||||| |||||||| |||||||||| ||||| ||| |||||||| |
|
|
| T |
26354822 |
aaatcaacaatggttttcttaaacacgcttaaatccttatatatgctagctaaaacagccggtgccaaagcaatagaatttcctctagc |
26354910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 340 - 413
Target Start/End: Complemental strand, 9815242 - 9815169
Alignment:
| Q |
340 |
ttcttaaacaaccttaaatccttatataagctagccaaaacagcaggtgccaaagaaataggattccctctagc |
413 |
Q |
| |
|
||||||||||| |||||||| ||||| | ||||| |||||||| |||||||||| ||||| ||| |||||||| |
|
|
| T |
9815242 |
ttcttaaacaaacttaaatcgttataaatactagctaaaacagctggtgccaaagcaatagaatttcctctagc |
9815169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 9e-40; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 1717764 - 1717609
Alignment:
| Q |
4 |
agcatttgttctactaccaaatctttcttaaatggtaccaaagtttcatcctttggataaaacactccacacttatcaacatattgaacataaggacgcc |
103 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||| ||||||| | ||||||||||| ||||| ||||||| ||||| |||||| ||||||| |
|
|
| T |
1717764 |
agcatttgttcatccaccaaatctttcttaaatggtaccaaaatttcatcatatggataaaacattccacgcttatcagcatatctaacatatggacgcc |
1717665 |
T |
|
| Q |
104 |
aaataaaatcatcgatggctgagtctaatgccaacctcacattgtcaattttcaag |
159 |
Q |
| |
|
||||||||||||| || ||||||||||||| |||||| |||| |||||||||||| |
|
|
| T |
1717664 |
aaataaaatcatcaatagctgagtctaatgtcaacctaacatcttcaattttcaag |
1717609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 340 - 413
Target Start/End: Complemental strand, 1717419 - 1717346
Alignment:
| Q |
340 |
ttcttaaacaaccttaaatccttatataagctagccaaaacagcaggtgccaaagaaataggattccctctagc |
413 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||| |||||||| |||||||||| ||||||||| |||||||| |
|
|
| T |
1717419 |
ttcttaaacaaagttaaatccttatatatgctagctaaaacagccggtgccaaagcaataggatttcctctagc |
1717346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 38483504 - 38483409
Alignment:
| Q |
20 |
ccaaatctttcttaaatggtaccaaagtttcatcctttggataaaacactccacacttatcaacatattgaacataaggacgccaaataaaatcat |
115 |
Q |
| |
|
|||||| ||||||||| ||||||||| | |||| ||| ||||||||| |||||||||||| ||||| || ||| |||||| ||| |||||||| |
|
|
| T |
38483504 |
ccaaatatttcttaaacggtaccaaaagtgcatcattttgataaaacaaaccacacttatcatcatatctaaaatatggacgctaaagaaaatcat |
38483409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 1717532 - 1717484
Alignment:
| Q |
230 |
ttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattg |
278 |
Q |
| |
|
||||||||||| || | ||||||| |||||||| ||||||||||||||| |
|
|
| T |
1717532 |
ttttgaaccttcccaacacccaaatttgaaccaagtaaaagggtgattg |
1717484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 39191598 - 39191724
Alignment:
| Q |
20 |
ccaaatctttcttaaatggtaccaaagtttcatcctttggataaaaca-ctccacac-ttatcaacatattgaacataaggacgccaaataaaatcatcg |
117 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||||| || |||| |||||| ||||||||||||| |||||||||| ||||||||| |
|
|
| T |
39191598 |
ccaaatccttcttaagcggtaccaaagtttcatcctttggataaaacatttctacactttatcagcatattgaacatatggacgccaaagaaaatcatcc |
39191697 |
T |
|
| Q |
118 |
atggctgagtctaatgccaacctcaca |
144 |
Q |
| |
|
| || || || ||||||||||||||| |
|
|
| T |
39191698 |
ttagccgaatccaatgccaacctcaca |
39191724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 6397324 - 6397478
Alignment:
| Q |
20 |
ccaaatctttcttaaatggtaccaaagtttcatcctttggataaaac--actccacacttatcaacatattgaacataaggacgccaaataaaatcatcg |
117 |
Q |
| |
|
||||||| ||||||||||||||||| |||| | ||||||||||| | ||||||||| ||| |||| |||||| |||||||||| ||||| |||| |
|
|
| T |
6397324 |
ccaaatccttcttaaatggtaccaagatttcgttatttggataaaaagaattccacacttctcaggatatctaacatatggacgccaaagaaaattatcg |
6397423 |
T |
|
| Q |
118 |
atggctgagtctaatgccaacctcacattgtcaattttcaaggccttaacattat |
172 |
Q |
| |
|
| | ||||||| |||||||| | | |||||||||||| ||||||| ||| |||| |
|
|
| T |
6397424 |
acagttgagtctcatgccaacttaatattgtcaattttaaaggcctgaaccttat |
6397478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 275
Target Start/End: Complemental strand, 6398606 - 6398537
Alignment:
| Q |
206 |
tcaacttgggttgtggctgcaaatttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtga |
275 |
Q |
| |
|
||||| || ||||||| ||||| ||| ||||||| ||||| ||| |||||||||||| |||||| ||||| |
|
|
| T |
6398606 |
tcaacatgagttgtggttgcaagtttgtgaacctctcccacacctaaacttgaaccacgtaaaaaggtga |
6398537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 413
Target Start/End: Original strand, 6397634 - 6397722
Alignment:
| Q |
325 |
aaatcaacaactgtgttcttaaacaaccttaaatccttatataagctagccaaaacagcaggtgccaaagaaataggattccctctagc |
413 |
Q |
| |
|
||||||| || ||| |||||||| || |||||||||||||| | |||||||||||| |||||||||| ||| ||||| ||||||| |
|
|
| T |
6397634 |
aaatcaataattgttttcttaaataaagataaatccttatatatgatagccaaaacagatggtgccaaagcaattggattttctctagc |
6397722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 12495578 - 12495734
Alignment:
| Q |
20 |
ccaaatctttcttaaatggtaccaaagtttcatcctttggataaaacac----tccacacttatcaacatattgaacataaggacgccaaataaaatcat |
115 |
Q |
| |
|
||||||| ||||||||||||||| || |||||| ||||||||||| | ||||||||| ||| |||| | |||| |||||||||| |||||||| |
|
|
| T |
12495578 |
ccaaatccttcttaaatggtacccaaatttcattatttggataaaaaaaaaattccacacttctcaggatatctagcatatggacgccaaagaaaatcat |
12495677 |
T |
|
| Q |
116 |
cgatggctgagtctaatgccaacctcacattgtcaattttcaaggccttaacattat |
172 |
Q |
| |
|
|| |||||||||||| ||| ||||||||||||| |||||||| ||| |||| |
|
|
| T |
12495678 |
tgacacttgagtctaatgcaaactgaacattgtcaatttgcaaggcctgaaccttat |
12495734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 275
Target Start/End: Complemental strand, 12497614 - 12497482
Alignment:
| Q |
142 |
acattgtcaattttcaaggccttaacattatgccatctcaacaatacatggtctcgattattgctcaacttgggttgtggctgcaaatttttgaaccttt |
241 |
Q |
| |
|
|||||| |||||||||||||| ||| |||||||| |||||||||| ||| ||| | ||| ||||| || ||||||| ||||| ||| || ||| | |
|
|
| T |
12497614 |
acattgccaattttcaaggccagaaccttatgccacctcaacaataaatgttctatgtggttgatcaacatgagttgtggttgcaagtttgcgagcctct |
12497515 |
T |
|
| Q |
242 |
cccaaacccaaacttgaaccaggtaaaagggtga |
275 |
Q |
| |
|
||| ||||||||| ||||||| |||||| ||||| |
|
|
| T |
12497514 |
ccc-aacccaaacatgaaccaagtaaaaaggtga |
12497482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 275
Target Start/End: Complemental strand, 12521479 - 12521347
Alignment:
| Q |
142 |
acattgtcaattttcaaggccttaacattatgccatctcaacaatacatggtctcgattattgctcaacttgggttgtggctgcaaatttttgaaccttt |
241 |
Q |
| |
|
|||||| |||||||||||||| ||| |||||||| |||||||||| ||| ||| | ||| ||||| || ||||||| ||||| ||| || ||| | |
|
|
| T |
12521479 |
acattgccaattttcaaggccagaaccttatgccacctcaacaataaatgttctatgtggttgatcaacatgagttgtggttgcaagtttgcgagcctct |
12521380 |
T |
|
| Q |
242 |
cccaaacccaaacttgaaccaggtaaaagggtga |
275 |
Q |
| |
|
||| ||||||||| ||||||| |||||| ||||| |
|
|
| T |
12521379 |
ccc-aacccaaacatgaaccaagtaaaaaggtga |
12521347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University