View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_4 (Length: 703)
Name: NF19878_low_4
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 524; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 16 - 691
Target Start/End: Original strand, 40515050 - 40515707
Alignment:
| Q |
16 |
aattttgcattattgaaactattatccacatttttctcaggtatgagataattcaccaaaacaaaaatattaacggagtaagttgggtacctcgccaatt |
115 |
Q |
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| T |
40515050 |
aattttgcattattgaaactattatccacatttttctcaggtatgagataattcaccaaaacaaaa-tattaacggagtaagttgggtacctcgccaatt |
40515148 |
T |
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| Q |
116 |
cctgaggctgccccagtgattagtactacttttctttccatgctttctgtgtgcaccaagttttttgcataaataagcaatttaacgaaaagataaggta |
215 |
Q |
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| T |
40515149 |
cctgaggctgccccagtgattagtactacttttctttccatgctttctgtgtgcaccaagttttttgcataaacaagcaatttaacgaaaagataaggta |
40515248 |
T |
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| Q |
216 |
gcatggtgatagggatcgaaatcagtgacaatggaggcaatactacattcagtatgttgcaaattgcactcattgttttgggatatttgattggcagcta |
315 |
Q |
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| T |
40515249 |
gcatggtgatagggatcgaaatcagtgacaatgggggcaatactacattcagtatgttgcaaattgcactcattgttttaggatatttgattggcagcta |
40515348 |
T |
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| Q |
316 |
aaactaaatttgcagcttctcagagtagaagttgtgtcttcaannnnnnnnnataactatgactatacaacacacatgcatgtgttgatgattgtattgt |
415 |
Q |
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| T |
40515349 |
aaactaaatttgcagcttctcagagtagaagttgtgtcttcaatttttttttataactatgactatacaacacacatgcatgtgttgatgattgtattgt |
40515448 |
T |
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| Q |
416 |
agctatgacttgaatttatattgtattgtgagacatgtctggcagtgactgttaactctaggacatgtctatcaataactatttttatgtacaattgcca |
515 |
Q |
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| T |
40515449 |
agctatgacttgaatttatattgtattgtgagacatgtctggcagtgactgttaactctaggacatgtctatcaataactatttttatgtataattgcca |
40515548 |
T |
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| Q |
516 |
attttgttgagggttgttggatggggcatgaaatagttattgcatctagcaatcacnnnnnnnnnnnnnnntcagcgtccttatcttactggctgttttc |
615 |
Q |
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| T |
40515549 |
attttgttgagggttgttggatggggcatgaaatagttattgcatctagcaatcacaaaaaggaaaaaaaatcagcgtccttatcttactg--------- |
40515639 |
T |
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| Q |
616 |
aatggaccgctggtgatgaaaatattggtggtggattggaatttcttaaggttgagccgtggctatgattgtcctt |
691 |
Q |
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| T |
40515640 |
--------gctggtgatgaaaatattggtggtggattggaatttcttaaggttgagccgtggctatgattgtcctt |
40515707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 136 - 298
Target Start/End: Original strand, 40528250 - 40528412
Alignment:
| Q |
136 |
tagtactacttttctttccatgctttctgtgtgcaccaagttttttgcataaataagcaatttaacgaaaagataaggtagcatggtgatagggatcgaa |
235 |
Q |
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| T |
40528250 |
tagtacaacttttcttgccatattttctgttcgcaccaacctttttatataaataagcaatttgaagaaaatgtaaggtagcatgatgatagggagcaga |
40528349 |
T |
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| Q |
236 |
atcagtgacaatggaggcaatactacattcagtatgttgcaaattgcactcattgttttggga |
298 |
Q |
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| T |
40528350 |
atcagtgacaatgggggcaatgctacattcagaatgttgcaaataatactcattgttttggga |
40528412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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