View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19878_low_41 (Length: 423)
Name: NF19878_low_41
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_41 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 387
Target Start/End: Complemental strand, 5114337 - 5113968
Alignment:
| Q |
18 |
ataaaaaccatcaattgttctatccattatttgctgttggttcacacatacaagctcacttaaatcccttggaaaattttcaaacccttgaaatatatgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5114337 |
ataaaaaccatcaattgttctatccattatttgctgttggttcacacatacaagctcacttaaatcccttggaaaattttcaaacccttgaaatatatgt |
5114238 |
T |
|
| Q |
118 |
gatggttggcaatttccaccattgtttgtaattgtattactcaccatggaaaaagggtttggaatgttcattaaacttgtgaaggatgtttgattgttcg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5114237 |
gatggttggcaatttccaccattgtttgtaattgtattactcaccatggaaaaagggtttggaatgttcattaaacttgtgaaggatgtttgattgttcg |
5114138 |
T |
|
| Q |
218 |
tatcataatcaattatggatgaatttgaaactggcataggatgaacagaatactctgcaggccaataaggagctgaactcatactattgacacccgaagc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| |
|
|
| T |
5114137 |
tatcataatcaattatggatgaatttgaaactggcataggatgaacagaatactctgcaggccaatatggtgctgaactcatactattgacacccaaagc |
5114038 |
T |
|
| Q |
318 |
cgccatcatcaaattctgatttgtttctcttttcatctcttgtttcatgttgctaactcggcgagcttgt |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5114037 |
cgccatcatcaaattctgatttgtttctcttttcatctcttgtttcatgttgctaactcggcgagcttgt |
5113968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University