View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_43 (Length: 418)
Name: NF19878_low_43
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 10 - 400
Target Start/End: Original strand, 35821957 - 35822347
Alignment:
| Q |
10 |
attatactgccacagtttcttcatttactaatatatttgtcaacttgttaaaattaccacatgtgtgatgcatttttaagcatttggtgatcatcttgat |
109 |
Q |
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| T |
35821957 |
attattctgccacagtttcttcatttactaatatatttgtcaacatgttaaaattaccacatgtgtgatgcatttttaagcatttggtgatcatcttgat |
35822056 |
T |
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| Q |
110 |
tctcagcttagatttattataaatgatgatcatatttaattttatttaataatatgtgcatccgtgttagcgtcggtcttatattttggaaataatgttt |
209 |
Q |
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| T |
35822057 |
tctcaacttagatttattataaatgatgatcatatttaattttatttaataatatgtgtatccgtgttagcgtcggtcttatattttggaaataatgttt |
35822156 |
T |
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| Q |
210 |
gtgttgtgtcctatgtccatgcctttgtctcattgacgggcatcaactgtcagtcacatgttggaccacttactaataataaataataaacattataata |
309 |
Q |
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| T |
35822157 |
gtgttgtgtcctatgtccatgcctttgtctcattgacgggcatcaactgtcagtcacatgttggaccactgactaataataaataataaacattataata |
35822256 |
T |
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| Q |
310 |
ggagacccaaggaggtgtgtcgatgcttgaaataatttgggcatatatgtaatgtattcatggcagttatgtattgtattttggcagtaat |
400 |
Q |
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| T |
35822257 |
ggagacccaaggaggtgtgtcgatgcttgaaataatttgggcatatatgtaatgtattcatggcagttatgttttgtattttggcagtaat |
35822347 |
T |
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