View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_44 (Length: 418)
Name: NF19878_low_44
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Complemental strand, 27130137 - 27129746
Alignment:
| Q |
18 |
atgttctaaattttcaacctggtgaagcctttgtggtccgtaacattgccaacatggttccaccatatgacaaggttaatttaaccttaatttgtccata |
117 |
Q |
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| T |
27130137 |
atgttctaaattttcaacctggtgaagcctttgtggtccgtaacattgccaacatggttccaccatatgacaaggttaatttaaccttaatttgtccata |
27130038 |
T |
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| Q |
118 |
atatattttactatgtcatgtagaaaaacaatttaaaacttgctacttaaatttgtcatcaaattgtagtttgaataacctttctattctattaataacg |
217 |
Q |
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| T |
27130037 |
atatattttactatgtcatgtagaaaaacaatttaaaacttgctacttaaatttgtcatcaaattgtagtttgaataacctttctattctattaataacg |
27129938 |
T |
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| Q |
218 |
tactgcagagcaagtattcaggaacaggtgctgccattgaatatgcagtcgtacatttaaaggtaaataaatagacagcattcttcttttccctataatg |
317 |
Q |
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| T |
27129937 |
tactgcagagcaagtattcaggaacaggtgctgccattgaatatgcagtcgtacatttaaaggtaaataaatagacagcattcttcttttccctataatg |
27129838 |
T |
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| Q |
318 |
agatgggtcacatatgcatgtgaaaactagctagtactagttagtttggtggtggaacatgtttccttttctcttgcatatccccacctttg |
409 |
Q |
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| T |
27129837 |
agatgggtcacatatgcatgtgaaaactagctagtactagttagtttggtggtggaacatgtttccttttctcttgcatatccccacttttg |
27129746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 14826364 - 14826431
Alignment:
| Q |
27 |
attttcaacctggtgaagcctttgtggtccgtaacattgccaacatggttccaccatatgacaaggtt |
94 |
Q |
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| T |
14826364 |
atttccaaccgggtgaagcctttgtggtccgtaacatcgccaacatggttccaccatttgataaggtt |
14826431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 282
Target Start/End: Original strand, 14826903 - 14826963
Alignment:
| Q |
222 |
gcagagcaagtattcaggaacaggtgctgccattgaatatgcagtcgtacatttaaaggta |
282 |
Q |
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| T |
14826903 |
gcagaccaagtattcgggagcaggggcagccattgaatatgcggtcttacatttaaaggta |
14826963 |
T |
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