View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_45 (Length: 417)
Name: NF19878_low_45
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Complemental strand, 49424100 - 49423713
Alignment:
| Q |
18 |
cgtggttctggtgcaacttggatggcgcttacggagacttccgttccatggtggtttcatgaatggagtgattatccagattactaatgacaggtttgta |
117 |
Q |
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| T |
49424100 |
cgtggttctggtgcaacttggatggcgcttacggagacttccgttccatggtggtttcatgaatggagcgattatccagattactaatgacaggtttgta |
49424001 |
T |
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| Q |
118 |
tcaactgctccttgaatacttagtatgcctgtggagaaccgagaaactcacgtcttataggtctaataaattcaaaaaataatggaaatgagaatcaagc |
217 |
Q |
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| T |
49424000 |
tcaactgctccttgaatacttagtatgcctgtggagaaccgagaaactcacgtcttataggtctaataaattcaaaaaataatggaa-tgagaatcaagc |
49423902 |
T |
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| Q |
218 |
ttttgaactgtcttaacaagccatttggggaagcttgttcagtgttttaattcaattgttcaaccttcattttaaacttaaagatggagatggttgatag |
317 |
Q |
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| T |
49423901 |
ttttgaactgtcttaacaagccatttggggaagcttgttcagtgttttaattcaattgttcaaccttcattttaaacttaaagttggagatggttgatag |
49423802 |
T |
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| Q |
318 |
attcaactttcaagacattagggataacattttttatgctcgtacaatttcggccattacagatttgcaatatcacgttacaacttcat |
406 |
Q |
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| T |
49423801 |
attcaactttcaagacattagggataacattttttatgctcgtacaatttcggccattacagatttgcaatatcacgttacaacttcat |
49423713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 215 - 406
Target Start/End: Complemental strand, 49426060 - 49425870
Alignment:
| Q |
215 |
agcttttgaactgtcttaacaagccatttggggaagcttgttcagtgttttaattcaattgttcaaccttcattttaaacttaaagatggagatggttga |
314 |
Q |
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| T |
49426060 |
agcttttgaactgtcttaatgaatcatttggggaaacttgttcagcttttcaattcaatagttcaacctctagtttaaactaaatgtatgagatggttca |
49425961 |
T |
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| Q |
315 |
tagattcaactttcaagacattagggataacattttttatgctcgtacaatttcggccattacagatttgcaatatcacgttacaacttcat |
406 |
Q |
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| T |
49425960 |
tagtttcaactttcaagacattagggatagcatttcttacgctcttaagatttc-gccaattcatattggcaatgtcatgttacaacttcat |
49425870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 204 - 351
Target Start/End: Original strand, 43363148 - 43363293
Alignment:
| Q |
204 |
aatgagaatcaagcttttgaactgtcttaacaagccatttggggaagcttgttcagtgttttaattcaattgttcaaccttcattttaaacttaaagatg |
303 |
Q |
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| T |
43363148 |
aatgagaaggaagtttttgaattgtcttaatgagtcatttggggaagcttgtttagtgtttcacttcaattgttcaacaaccagtttaaact--atgtag |
43363245 |
T |
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| Q |
304 |
gagatggttgatagattcaactttcaagacattagggataacattttt |
351 |
Q |
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| T |
43363246 |
gagatgattaatagattcaactttcaagacataagggataacattttt |
43363293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 49416557 - 49416656
Alignment:
| Q |
26 |
tggtgcaacttggatggcgcttacggagacttccgttccatggtggtttcatgaatggagtgattatccagattactaatgacaggtttgtatcaactgc |
125 |
Q |
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| T |
49416557 |
tggtgcagcttggatgacacttacagagacttccgcttcgtggtggtttcatgaacggagtgattatccagattaccattgatacgtttgtatcaactgc |
49416656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 345
Target Start/End: Complemental strand, 17641030 - 17640992
Alignment:
| Q |
307 |
atggttgatagattcaactttcaagacattagggataac |
345 |
Q |
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| T |
17641030 |
atggttgatagattcaactttcaagaatttagggataac |
17640992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 43362976 - 43363025
Alignment:
| Q |
60 |
gttccatggtggtttcatgaatggagtgat--tatccagattactaatga |
107 |
Q |
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| T |
43362976 |
gttccatggtggtttcatgaaagaagtgattatatccagattactaatga |
43363025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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