View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_46 (Length: 417)
Name: NF19878_low_46
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 13 - 393
Target Start/End: Original strand, 26017288 - 26017668
Alignment:
| Q |
13 |
aatatatagtctaagatttttgtttgtgattggtacaggcnnnnnnnggcatatttgatggacatggaggtacaaaagcttcagaatttgctgcacgtaa |
112 |
Q |
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| T |
26017288 |
aatatatagtctaagatttttgtttgtgattggtacaggcattttttggcatatttgatggacatggaggtacaaaagcttcggaattcgcggcacagaa |
26017387 |
T |
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| Q |
113 |
cttggaaaagaatgtgttagaggaagtaatcagaagagatgaaagtgatattgaggaagcagtgaagcatggttacctcaaaacagattcagatttctta |
212 |
Q |
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| T |
26017388 |
cttggaaaagaatgtgttagaggaagtaatcagaagagatgaaagtgatattgaggaagcagtgaagcatggttacctcaaaacagattcagatttctta |
26017487 |
T |
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| Q |
213 |
aaagaggatcttaatggtggctcttgctgcgtaacagcatttattaggaatggtaaccttgttgtgtccaatgcaggcgattgtcgcgctgtcataagta |
312 |
Q |
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| T |
26017488 |
aaagaagatcttaatggtggctcttgctgtgtaacagcatttattaggaatggtaaccttgttgtgtccaatgcaggcgattgtcgcgctgtcatcagta |
26017587 |
T |
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| Q |
313 |
gaggaggtcttgctgaggccttaacatctgatcacaaaccttcgaggaaagacgaaaaggaacggattgaaactcaggtaa |
393 |
Q |
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| T |
26017588 |
gaggaggtgttgctgaggccttaacgtcggatcacaaaccttcaaggaaagacgaaaaagaacgaattgaaactcaggtaa |
26017668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 60 - 393
Target Start/End: Original strand, 26002523 - 26002856
Alignment:
| Q |
60 |
ggcatatttgatggacatggaggtacaaaagcttcagaatttgctgcacgtaacttggaaaagaatgtgttagaggaagtaatcagaagagatgaaagtg |
159 |
Q |
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| T |
26002523 |
ggcatatttgatggacatggaggtacaaaagcttcggaattcgcggcacagaacttggaaaagaatgtgttagaagaagtaatcagaagagatgagagtg |
26002622 |
T |
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| Q |
160 |
atattgaggaagcagtgaagcatggttacctcaaaacagattcagatttcttaaaagaggatcttaatggtggctcttgctgcgtaacagcatttattag |
259 |
Q |
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| T |
26002623 |
atattgaggaagcagtgaaacatggttacctcaaaacagattcagatttcttaaaagaagatcttaatggtggttcttgctgtgtaacagcattaattag |
26002722 |
T |
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| Q |
260 |
gaatggtaaccttgttgtgtccaatgcaggcgattgtcgcgctgtcataagtagaggaggtcttgctgaggccttaacatctgatcacaaaccttcgagg |
359 |
Q |
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| T |
26002723 |
aaatggcaaccttgttatgtccaatgccggtgattgtcgtgctgtcatcagccatggaggtgctgctgaagccttaacatcagatcacaaaccttcgagg |
26002822 |
T |
|
| Q |
360 |
aaagacgaaaaggaacggattgaaactcaggtaa |
393 |
Q |
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| T |
26002823 |
aaagacgaaaaagaacggattgagactcaggtaa |
26002856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 64 - 373
Target Start/End: Original strand, 30373857 - 30374166
Alignment:
| Q |
64 |
tatttgatggacatggaggtacaaaagcttcagaatttgctgcacgtaacttggaaaagaatgtgttagaggaagtaatcagaagagatgaaagtgatat |
163 |
Q |
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| T |
30373857 |
tatttgatggacatggaggtgccaaagccgctgaatttgcggcaaacaacttagaaaagaacatcttggacgaagttatcatgagcgacaaagatgatgt |
30373956 |
T |
|
| Q |
164 |
tgaggaagcagtgaagcatggttacctcaaaacagattcagatttcttaaaagaggatcttaatggtggctcttgctgcgtaacagcatttattaggaat |
263 |
Q |
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| T |
30373957 |
tgaggaggcagtgaagcgcggttacctcaataccgattctgagttcatgaaaaaagatctacatggtggttcttgttgtgtgacagcattcattaggaat |
30374056 |
T |
|
| Q |
264 |
ggtaaccttgttgtgtccaatgcaggcgattgtcgcgctgtcataagtagaggaggtcttgctgaggccttaacatctgatcacaaaccttcgaggaaag |
363 |
Q |
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| T |
30374057 |
ggtaacttagttgtgtctaatgctggtgattgccgtgctgttattagtagaggaggggttgctgaggcactaacatctgatcaccgtccttcaagggaag |
30374156 |
T |
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| Q |
364 |
acgaaaagga |
373 |
Q |
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|||||||||| |
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| T |
30374157 |
acgaaaagga |
30374166 |
T |
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