View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_5 (Length: 684)
Name: NF19878_low_5
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 7e-97; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 139 - 369
Target Start/End: Original strand, 44756279 - 44756506
Alignment:
| Q |
139 |
gtgatcattgggtgttaccgtttgaaaaatatggaagaagttgtgttactaatcgatgatttaaggttactttctggaatttctcgctgtagaatttgcc |
238 |
Q |
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| T |
44756279 |
gtgatcattgggtgttaccgtttgaaaaatatggaagaagttgtgttactaatcgatgatttaaggttactttctggaatttctcgctgtagaatttgcc |
44756378 |
T |
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| Q |
239 |
atgaagaagagtttgaaagctccaaagccttagaagcaccttgttcttgttctggaactgttaaggtaag-nnnnnnnnncacatgatcttttacttaac |
337 |
Q |
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| T |
44756379 |
atgaagaagagtttgaaagctccaaagccttagaagcaccttgttcttgttctggaactgttaaggtaagaaaaaaaaaacacatgatcttttacttaac |
44756478 |
T |
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| Q |
338 |
gtattaattaatcaactcttacaagcttatgg |
369 |
Q |
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|| |||||||||||||||||||||||||| |
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| T |
44756479 |
gt----attaatcaactcttacaagcttatgg |
44756506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 439 - 624
Target Start/End: Original strand, 44756576 - 44756765
Alignment:
| Q |
439 |
ttctttcagtttgctcatagagattgcatacaaagatggtgtaacgagaaaggaaatacaacctgtgaaatatgtctccaggtat----gtatgtatgat |
534 |
Q |
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| T |
44756576 |
ttctttcagtttgctcatagagattgcatacaaagatggtgtaacgagaaaggaaatacaacctgtgaaatatgtctccaggtatgtatgtatgtatgat |
44756675 |
T |
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| Q |
535 |
gattaataacgttgttttcattttctgttttagtaagttgtgatcaaacttgattttaattcttcttaatattatatttattgctaataa |
624 |
Q |
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| T |
44756676 |
gattaataacgttgttttcattttctgttttagtaagttgtgatcaaacttgattttaattcttcttaatattatatttattgctaataa |
44756765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 44756141 - 44756206
Alignment:
| Q |
1 |
agggcaatattggaactctctaaagttagttctttctttctttcgtatataaagccttggttcgtt |
66 |
Q |
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| T |
44756141 |
agggcaatattggaactctctaaagttggttctttctttctttcgtatataaagccttggttcgtt |
44756206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 211 - 307
Target Start/End: Complemental strand, 39043855 - 39043759
Alignment:
| Q |
211 |
tctggaatttctcgctgtagaatttgccatgaagaagagtttgaaagctccaaagccttagaagcaccttgttcttgttctggaactgttaaggtaa |
307 |
Q |
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| T |
39043855 |
tctggattttctcgttgtagaatatgccatgaagaagaatttgaaagcttcaaaagcttagaagctccttgtgcatgttctggtacagttaaggtaa |
39043759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 446 - 524
Target Start/End: Complemental strand, 39043666 - 39043588
Alignment:
| Q |
446 |
agtttgctcatagagattgcatacaaagatggtgtaacgagaaaggaaatacaacctgtgaaatatgtctccaggtatg |
524 |
Q |
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|||||||||||||||||||||| |||| |||||| || || |||||||||||||| |||||||| ||||| |||||||| |
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| T |
39043666 |
agtttgctcatagagattgcattcaaacatggtgcaatgaaaaaggaaatacaacttgtgaaatttgtctacaggtatg |
39043588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 21222943 - 21223001
Alignment:
| Q |
139 |
gtgatcattgggtgttaccgtttgaaaaatatggaagaagttgtgttactaatcgatga |
197 |
Q |
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| T |
21222943 |
gtgatcattgagtgttaccgtttgaaaaatatggaagaggttgtgttgctaatcgatga |
21223001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 272 - 308
Target Start/End: Original strand, 21223014 - 21223050
Alignment:
| Q |
272 |
aagcaccttgttcttgttctggaactgttaaggtaag |
308 |
Q |
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|||||||||||||||||||||||| |||||||||||| |
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| T |
21223014 |
aagcaccttgttcttgttctggaaatgttaaggtaag |
21223050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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