View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_50 (Length: 402)
Name: NF19878_low_50
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 81 - 386
Target Start/End: Original strand, 52050503 - 52050808
Alignment:
| Q |
81 |
caaaccaagaaccaggatgaattgtaacatcaaaaacaggaaaagattgtggaagtccattgttctttgttcaacctcaatctttctctttctatgaaaa |
180 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52050503 |
caaaccaagaaccaggatgaattgtaacatcaaaaacaggaaaagattgtggaagtccattgttctttgttcaaccgtaatctttctctttctatgaaaa |
52050602 |
T |
|
| Q |
181 |
ctttgcttgacgacaaatattactttcagattctttgaattaatttgtatatttatatgacacaacagcttctttatatatctccatatatgtaaacttc |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
52050603 |
ctttgcttgacgacaaatattactttcagattctttgaattaatttgtatatttgtatgacacaacagcttctttatatatctccatatatgcaaacttc |
52050702 |
T |
|
| Q |
281 |
atcaaaacgttttctgcaaaagcgaatttcaattgctttaggagaatgaaatttgattttgcataaatttatagaaagtgtgttattgcacatttaatga |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52050703 |
atcaaaacgttttctgcaaaagcgaatttcaattgctttaggagaatgaaatttgattttgcataaatttatagaaagtgtgttattgcacatttaatga |
52050802 |
T |
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| Q |
381 |
atttta |
386 |
Q |
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|||||| |
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| T |
52050803 |
atttta |
52050808 |
T |
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