View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_51 (Length: 402)
Name: NF19878_low_51
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_51 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: scaffold0004 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 11 - 390
Target Start/End: Complemental strand, 380109 - 379729
Alignment:
| Q |
11 |
ttattctaacacctatttgtggctcagattttcatccgtatgcttccaagagtgatacactacatatataaacaaatccttttggcaccacaaaatttat |
110 |
Q |
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| T |
380109 |
ttattctaacacctatttgtggctcagattttcatccgtatgcttccaagagtgatacactacatgtatgaacaaatccttttggcaccacaaaatttat |
380010 |
T |
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| Q |
111 |
ttattacaaaacatagttcttaaacccattttattcccatgactcatcacgcatcacaacacaacaatcattcttgaattttgtcatcggtacttca-nn |
209 |
Q |
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| T |
380009 |
ttattacaaaacatagttcttaaacccattctattcccatgactcgtcacgcatcacaacacaacaatcattcttgaatcttgtcatcggtacttcattt |
379910 |
T |
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| Q |
210 |
nnnnnnaaagtgcttaaaaatatttgtatggcgtcaattccatggtgaaccatatattccaaacaatgaattaaaggacataggtagataaaatatggaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
379909 |
ttttttaaagtgcttaaaaatatttgtatggcgtcaattccatggtgaaccatataatccaaacaatgaattaaaggacataagtagataaaatatggaa |
379810 |
T |
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| Q |
310 |
aatgttactaaactatcttagagcatttgttaagaagtttacagtttctttataatataataataaattaaataagtaaac |
390 |
Q |
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|||||||||||||| ||| |||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
379809 |
aatgttactaaactctctaagagtatttgttaagaagtttaaagtttttttataatataataataaattaaataagtaaac |
379729 |
T |
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