View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_56 (Length: 382)
Name: NF19878_low_56
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 16 - 364
Target Start/End: Complemental strand, 43444811 - 43444463
Alignment:
| Q |
16 |
attaatagggagagcattatgaaaacaaagccatnnnnnnntgtttgagttttggtggtacttgactccaaatctaatgctatttgggttttcactcttt |
115 |
Q |
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| T |
43444811 |
attaatagggagagaattatgaaaacaaagccataaaaaaatgtttgagttttggtggtacttgactccaaatctaatgctatttgggttttcactcttt |
43444712 |
T |
|
| Q |
116 |
tattttatctataaaccacaaacaaatagaaagtattaatctatgttgtattacatttgaatgtctaaatgaattcgatttgaagtaaataggattcaga |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43444711 |
tattttatctataaaccacaaacaaatagaaagtattaatctatgttgtattacatttgaatgtctaaatggattcgatttgaagtaaataggattcaga |
43444612 |
T |
|
| Q |
216 |
tatatttgattggtaaggtgaaattatgacaccctagtttgaaaaaatcatatcggacaagctttatatattagtttgtttggcatgttaacgatttgta |
315 |
Q |
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|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43444611 |
tatatttgattggtaaggcgaaattatgacaccctagttggaaaaaatcatatcggacaagctttatatattagtttgtttggcaagttaacgatttgta |
43444512 |
T |
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| Q |
316 |
aaagtgataaatattaataattatgggtgtcgtcatggcagacgagagt |
364 |
Q |
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| T |
43444511 |
aaagtgataaatattaataattatgggtgtcgtcatggcagacgagagt |
43444463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 23589310 - 23589264
Alignment:
| Q |
3 |
gatgtcgaagaatattaatagggagagcattatgaaaacaaagccat |
49 |
Q |
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| T |
23589310 |
gatgccgacgaacattaatagggagagcattgtgaaaacaaagccat |
23589264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 4653026 - 4652997
Alignment:
| Q |
16 |
attaatagggagagcattatgaaaacaaag |
45 |
Q |
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| T |
4653026 |
attaatagggagagcattatgaaaacaaag |
4652997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 6571863 - 6571891
Alignment:
| Q |
16 |
attaatagggagagcattatgaaaacaaa |
44 |
Q |
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| T |
6571863 |
attaatagggagagcattatgaaaacaaa |
6571891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 16824888 - 16824921
Alignment:
| Q |
16 |
attaatagggagagcattatgaaaacaaagccat |
49 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
16824888 |
attaatagggagagcattatgaaaacaaacccat |
16824921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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