View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_58 (Length: 378)
Name: NF19878_low_58
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_58 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 70 - 319
Target Start/End: Complemental strand, 22299828 - 22299578
Alignment:
| Q |
70 |
attattacctcaaactcaaagcaccgtttgttacttagagaacagcttgcaacaattcctcttacatgtcaaatatattgctactattttttctttaaga |
169 |
Q |
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| T |
22299828 |
attattacctcaaactcaaagcatcctttggtacatagagaacagcatgcaacaattcctcttacatgtcaagtataatgctattaatttttcttgaaga |
22299729 |
T |
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| Q |
170 |
aagtgagt-ttgttgtttatatcattttggtaatattttagcttgtgcatgtgatactgctaggagttgttgagtgagcatgtgattaaatctttgcaag |
268 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22299728 |
aagtgagtattgttgtttatatcattttggtaatattttagcttgtgcatgtgatactgctaggagttgttgagtgagcatgtgcttaaatctttgcaag |
22299629 |
T |
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| Q |
269 |
ctgtattattgtcaaaaagaatcatcatgcaagaattatcactttcactta |
319 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22299628 |
ctgtaatattgtcaaaaagaatcatcatgcaagaattatcactttcactta |
22299578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 134 - 243
Target Start/End: Complemental strand, 22293895 - 22293786
Alignment:
| Q |
134 |
catgtcaaatatattgctactattttttctttaagaaagtgagtttgttgtttatatcattttggtaatattttagcttgtgcatgtgatactgctagga |
233 |
Q |
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||||||||||||||||||| || |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
22293895 |
catgtcaaatatattgctattaatttttcattaagaaagtgagtttgttgtttgtatcattttggtaatattttagcttgtgcatgtgatactgccggga |
22293796 |
T |
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| Q |
234 |
gttgttgagt |
243 |
Q |
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| T |
22293795 |
gctgttgagt |
22293786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 17112881 - 17112840
Alignment:
| Q |
110 |
aacagcttgcaacaattcctcttacatgtcaaatatattgct |
151 |
Q |
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|||| ||||||||||||||||||||||||| || |||||||| |
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| T |
17112881 |
aacaacttgcaacaattcctcttacatgtctaaaatattgct |
17112840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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