View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_59 (Length: 376)
Name: NF19878_low_59
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_59 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 9 - 361
Target Start/End: Original strand, 11902594 - 11902947
Alignment:
| Q |
9 |
gattattcttgatgttgataaatttgatgccgaattcgacacctattgttatgtcatgaatgggtttaaagctgttgtctgtgaatcgaaatagaagaca |
108 |
Q |
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| T |
11902594 |
gattattcttgatgttgataaatttgatgccgaattcgacacctattgttatgtcatggatgggtttaaagctgttgtctgtgaatcgaaatagaagaca |
11902693 |
T |
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| Q |
109 |
tgattttccaactcctatgtcaccgattattatgaatttgaatagatatgagtgagacattttttcctacgagaattttgtgaaaatgcaaagtgggaac |
208 |
Q |
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| T |
11902694 |
tgattttccgactcctatgtcaccgattattatgaatttgaatagatatgagtgagacattttttcctacgagaattttgtgaaaatgcaaagtgggaac |
11902793 |
T |
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| Q |
209 |
aaggaaggaatgcagaga-nnnnnnnattatttttgaagtaggaaggagtgtgaagattcaaagcgaggaattgtgatgatttaaaaaagtacagcacca |
307 |
Q |
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| T |
11902794 |
aaggaaggaatgcagagattttttttatttttttttaagtaggaaggagtgtgaagattcaaagcgaggaattgtgatgatttaaaaaagtgcagcacca |
11902893 |
T |
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| Q |
308 |
ataaatctatatatagggatacaatataatcctaattgaacagagaaactaatt |
361 |
Q |
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| T |
11902894 |
ataaatctatatatagggatacaatataatcctaattgaacagagaaactaatt |
11902947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 41 - 201
Target Start/End: Complemental strand, 11916980 - 11916819
Alignment:
| Q |
41 |
aattcgacacctattgttatgtcatgaatgggtttaaagctgttgtctgtgaatcgaaatagaagacatgattttccaactcctatgtcaccgattatta |
140 |
Q |
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| T |
11916980 |
aattcgacaccaattgttgtgtcgtggaagcgttgaaagcggttgtctgtgaattgaagtagaagacatgattttccgactccaatatcgccgattatta |
11916881 |
T |
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| Q |
141 |
tgaatttgaatagatatgagtgagacattttttcctacgagaatt-ttgtgaaaatgcaaag |
201 |
Q |
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| T |
11916880 |
tgtatttgaaggcatatgagcgagacatttttttctacgagaattgttgtgaagaagcaaag |
11916819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 41 - 201
Target Start/End: Original strand, 11931377 - 11931538
Alignment:
| Q |
41 |
aattcgacacctattgttatgtcatgaatgggtttaaagctgttgtctgtgaatcgaaatagaagacatgattttccaactcctatgtcaccgattatta |
140 |
Q |
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| T |
11931377 |
aattcgacaccaattgttacgtcgtggaagcgttgaaagcggttgtctgtgaattgaagtagaagacatgattttccgactccagtatcgccgattatta |
11931476 |
T |
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| Q |
141 |
tgaatttgaatagatatgagtgagacattttttcctacgagaatt-ttgtgaaaatgcaaag |
201 |
Q |
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| T |
11931477 |
tgtatttgaaggcatatgagcgagacatttttttctatgagaattgttgtgaataagcaaag |
11931538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 11913150 - 11912990
Alignment:
| Q |
11 |
ttattcttgatgttgataaatttgatgccgaattcgacacctattgttatgtcatgaatgggtttaaagctgttgtctgtgaatcgaaatagaagacatg |
110 |
Q |
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| T |
11913150 |
ttattcttgatgttgattattttgacaccgaattcgacacctattgttatgttgtggattggttgaaaacggttgtctgtgaattgaagtagaatacatg |
11913051 |
T |
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| Q |
111 |
attttccaactcctatgtcaccgattattatgaatttgaatagatatgagtgagacatttt |
171 |
Q |
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| T |
11913050 |
attttctaacaccggtgtcgccgattattatgtagtcgaagatatatgagcaagacatttt |
11912990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 76 - 220
Target Start/End: Original strand, 11907381 - 11907526
Alignment:
| Q |
76 |
aaagctgttgtctgtgaatcgaaatagaagacatgattttccaactcctatgtcaccgattattatgaatttgaatagatatgagtgagacattttttcc |
175 |
Q |
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| T |
11907381 |
aaagcggttgtccatgaattgaagtacaagacatgattttccgactccagtgtcgccgattattatgtatttgaaggcataggagtgagacatgtttttc |
11907480 |
T |
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| Q |
176 |
tacgagaatt-ttgtgaaaatgcaaagtgggaacaaggaaggaatg |
220 |
Q |
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| T |
11907481 |
tacgatatttgttgtgaaaaagcaaagagggaacaaggaacgaatg |
11907526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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