View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_6 (Length: 656)
Name: NF19878_low_6
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 144 - 641
Target Start/End: Complemental strand, 32282443 - 32281933
Alignment:
| Q |
144 |
tacgagattctatcttgtgtcttcaacttgcatcgattttgtcgtttatgtaggttcattttgcttctttttcatgataaaaactacccttatttctata |
243 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32282443 |
tacgaggttctatcttgtgtcttcaacttgcatcgattttgtcgtttatgtaggttcattttgcttctttttcatgataaaaactacccttatttcgata |
32282344 |
T |
|
| Q |
244 |
gaatgaatttgggttgtacttgcatttgttgagttgaacacactagaatatgattgtattatcatgtgtctgtaatcnnnnnnnnnnn---agtggtcca |
340 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32282343 |
gaatgaatttgggttgtacttgcatttgttgagttgaacacactagaatatgattgtattatcatgtgtctgtaatcttttttttttttttagtggtcca |
32282244 |
T |
|
| Q |
341 |
atactagaatatcttgtcgttaccttgcttctgctaaatttgcattgttcaaatgagtttatttcaacaatttgcgcggtgttttatggttgattttgtt |
440 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32282243 |
atactagaatatcttgtcgttaccttgcttctgctaaatttgcattgttcaaatgagtttatttcaacaatttgcgcggtgttttatggttgattttgtt |
32282144 |
T |
|
| Q |
441 |
aagagtcttacatttgatgagatatgacttgacaatacgtttggtggtctcggttttgttaggttcagttaggtccaac----------ccaaattctaa |
530 |
Q |
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| T |
32282143 |
aagagtcttacatttgatgagatatgacttgacaatacgtttggtggtctcggttttcttaggttcagttaggtccaacccaatccaacccaaattctaa |
32282044 |
T |
|
| Q |
531 |
gagatttgattcaaaataaagagagaattttggattttgaaaacattgagattttgggttttggattataacaattaatggattaattaattaattgtgt |
630 |
Q |
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| T |
32282043 |
gagatttgattcaaaataaagagagaattttggattttgaaaacattgagattttgggttttggattataacaattaatggattaattaattaattgtgt |
32281944 |
T |
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| Q |
631 |
gatgatagtat |
641 |
Q |
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||||||||||| |
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| T |
32281943 |
gatgatagtat |
32281933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 32282587 - 32282486
Alignment:
| Q |
1 |
catttcaattgcatttcatttcagacgcttttgtatgtgattatcatctattccactttcatcactctcctctactgcactagttattcaatttctctct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32282587 |
catttcaattgcatttcatttcagacgcttttgtatgtgattatcatttattccactttcatcactctcctctactgcactagttattcaatttctctct |
32282488 |
T |
|
| Q |
101 |
aa |
102 |
Q |
| |
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|| |
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| T |
32282487 |
aa |
32282486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 491 - 535
Target Start/End: Complemental strand, 31973176 - 31973132
Alignment:
| Q |
491 |
cggttttgttaggttcagttaggtccaacccaaattctaagagat |
535 |
Q |
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| T |
31973176 |
cggttttgtaaggttcagttaggcccaacccaaattctaagagat |
31973132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 493 - 535
Target Start/End: Original strand, 347351 - 347393
Alignment:
| Q |
493 |
gttttgttaggttcagttaggtccaacccaaattctaagagat |
535 |
Q |
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| T |
347351 |
gttttgtaaggttgagttaggttcaacccaaattctaagagat |
347393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 533
Target Start/End: Complemental strand, 13031166 - 13031125
Alignment:
| Q |
492 |
ggttttgttaggttcagttaggtccaacccaaattctaagag |
533 |
Q |
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| T |
13031166 |
ggttttgtagggttgagttaggtccaacccaaattctaagag |
13031125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 530
Target Start/End: Original strand, 11584349 - 11584385
Alignment:
| Q |
494 |
ttttgttaggttcagttaggtccaacccaaattctaa |
530 |
Q |
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|||||||||| | |||||||||||||||||||||||| |
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| T |
11584349 |
ttttgttaggctgagttaggtccaacccaaattctaa |
11584385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 524
Target Start/End: Complemental strand, 37253301 - 37253268
Alignment:
| Q |
491 |
cggttttgttaggttcagttaggtccaacccaaa |
524 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
37253301 |
cggttttgtaaggttcagttaggtccaacccaaa |
37253268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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