View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19878_low_63 (Length: 365)
Name: NF19878_low_63
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_63 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 41785761 - 41785410
Alignment:
| Q |
1 |
attgctcatgacacactctctgtgttcctcgacttttgcagccactacatctaatccatttagagcagcatcaaattcaaaaccctttagatcaaccact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41785761 |
attgctcatgacacactctctgtgttcctcgactttcgcagccactacatctaatccatttagagcagcatcaaattcaaaaccctttagatcaaccact |
41785662 |
T |
|
| Q |
101 |
ggtgagtgtgtttcctcacttgcagttgcagtaacattagcagcaccctctttaagccttcttagttcctcttcataaatagaaactttctccccaagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41785661 |
ggtgagtgtgtttcctcacttgcatttgcagtaacattagcagcaccctctttaagccttcttagttcctcttcataaatagaaactttctccccaagaa |
41785562 |
T |
|
| Q |
201 |
tcttgttctcttcctcgtaccttatctttgttaatttgcaactgcttttgttctcattgttcaattgttctgctacgtggatcctctggtgcaacaagcg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41785561 |
tcttgttctcttcctcgtaccttatctttgttaatttgcaactgcttttgttctcattgttcaattgttctgctacgtggatcctctggtgcaacaagcg |
41785462 |
T |
|
| Q |
301 |
gatattgtcttccattttcttcctcaacttttctgccaattcttccattttc |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41785461 |
gatattgtcttccattttcttcctcaacttttctgccaattcttccattttc |
41785410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 187 - 352
Target Start/End: Complemental strand, 10834795 - 10834629
Alignment:
| Q |
187 |
tttctccccaagaatcttgttctcttcctcgtaccttatctttgttaatttgcaactgcttttgttctcattgttcaattgttctgctacgtggatcctc |
286 |
Q |
| |
|
|||||| || |||||||||||||||| ||| ||||||| ||||||||||||||||||| ||||||| |||||||||| |||||||| | ||||||||| |
|
|
| T |
10834795 |
tttctctcccagaatcttgttctcttgctcataccttaactttgttaatttgcaactgtttttgttttcattgttcagctgttctgccaaatggatcctc |
10834696 |
T |
|
| Q |
287 |
tggtgcaacaag-cggatattgtcttccattttcttcctcaacttttctgccaattcttccattttc |
352 |
Q |
| |
|
| |||||||||| | ||||||| ||||||| ||| || || | | |||||||||||||||||||| |
|
|
| T |
10834695 |
tagtgcaacaagccctatattgttttccattctctatctaaaatctcctgccaattcttccattttc |
10834629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 194 - 320
Target Start/End: Original strand, 2281450 - 2281576
Alignment:
| Q |
194 |
ccaagaatcttgttctcttcctcgtaccttatctttgttaatttgcaactgcttttgttctcattgttcaattgttctgctacgtggatcctctggtgca |
293 |
Q |
| |
|
||||| || |||||||||||||| ||| || |||||| |||||| ||||| |||||| || || |||| |||||||||||||||||||||| | |||| |
|
|
| T |
2281450 |
ccaagcattttgttctcttcctcatacttttgctttgtcaatttgtaactgtgtttgttttcgttattcagttgttctgctacgtggatcctccgatgca |
2281549 |
T |
|
| Q |
294 |
acaagcggatattgtcttccattttct |
320 |
Q |
| |
|
| | | ||||| ||||||||||||| |
|
|
| T |
2281550 |
atatatgtatattatcttccattttct |
2281576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University