View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_64 (Length: 365)
Name: NF19878_low_64
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_64 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 350
Target Start/End: Complemental strand, 40310489 - 40310150
Alignment:
| Q |
11 |
ggtgaagaatttgtttggtcgtgtaagaatgaagatcatacttgtccctggagattctgctggacctgttaccgcattttatgtaagctcaaattaattt |
110 |
Q |
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| T |
40310489 |
ggtgaagtatttgtttggtcgtgtaagcatgaagatcaaacttgtccctggagattctgctggtactgttactgcattttatgtaagttcatattaattt |
40310390 |
T |
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| Q |
111 |
ctgcactctttgtttggaacataattaagtgaaacaaaaaatgaattcactaaatattgtttttgtggtagatgaactctgacactgacagtgtacgtga |
210 |
Q |
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| T |
40310389 |
ccctactctttgttaaaaatataattaagcgagtcaaaaactgaaatcattgaatatattttttgtggtagatgaactctgacactgacagtgtacgtga |
40310290 |
T |
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| Q |
211 |
tgagttggattttgagttcttgggaaaccgtactggacaaccttacacagttcaaacaaacatttatgctcatggaaagggtgacagagaacaaagagtt |
310 |
Q |
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| T |
40310289 |
tgagttggattttgagttcttgggaaaccgtactggacaaccttacacagttcaaacaaacatttatgctcatggaaagggtgatagagaacaaagagtt |
40310190 |
T |
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| Q |
311 |
aatctttggtttgatccttctgctgatttccacacttact |
350 |
Q |
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| T |
40310189 |
aatctttggtttgatccttctgctgatttccacacttact |
40310150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 350
Target Start/End: Complemental strand, 40320565 - 40320226
Alignment:
| Q |
11 |
ggtgaagaatttgtttggtcgtgtaagaatgaagatcatacttgtccctggagattctgctggacctgttaccgcattttatgtaagctcaaattaattt |
110 |
Q |
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| T |
40320565 |
ggtgaagtatttgtttggtcgtgtaagcatgaagatcaaacttgtccctggagattctgctggtactgttactgcattttatgtaagttcatattaattt |
40320466 |
T |
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| Q |
111 |
ctgcactctttgtttggaacataattaagtgaaacaaaaaatgaattcactaaatattgtttttgtggtagatgaactctgacactgacagtgtacgtga |
210 |
Q |
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| T |
40320465 |
ccctactctttgttaaaaatataattaagcgagtcaaaaactgaaatcattgaatatattttttgtggtagatgaactctgacactgacagtgtacgtga |
40320366 |
T |
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| Q |
211 |
tgagttggattttgagttcttgggaaaccgtactggacaaccttacacagttcaaacaaacatttatgctcatggaaagggtgacagagaacaaagagtt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40320365 |
tgagttggattttgagttcttgggaaaccgtactggacaaccttacacagttcaaacaaacatttatgctcatggaaagggtgatagagaacaaagagtt |
40320266 |
T |
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| Q |
311 |
aatctttggtttgatccttctgctgatttccacacttact |
350 |
Q |
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| T |
40320265 |
aatctttggtttgatccttctgctgatttccacacttact |
40320226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 350
Target Start/End: Complemental strand, 40330031 - 40329692
Alignment:
| Q |
11 |
ggtgaagaatttgtttggtcgtgtaagaatgaagatcatacttgtccctggagattctgctggacctgttaccgcattttatgtaagctcaaattaattt |
110 |
Q |
| |
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||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||| ||| |||||||| |
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| T |
40330031 |
ggtgaagtatttgtttggtcgtgtaagcatgaagatcaaacttgtccctggagattctgctggtactgttactgcattttatgtaagttcatattaattt |
40329932 |
T |
|
| Q |
111 |
ctgcactctttgtttggaacataattaagtgaaacaaaaaatgaattcactaaatattgtttttgtggtagatgaactctgacactgacagtgtacgtga |
210 |
Q |
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| T |
40329931 |
ccctactctttgttaaaaatataattaagcgagtcaaaaactgaaatcattgaatatattttttgtggtagatgaactctgacactgacagtgtacgtga |
40329832 |
T |
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| Q |
211 |
tgagttggattttgagttcttgggaaaccgtactggacaaccttacacagttcaaacaaacatttatgctcatggaaagggtgacagagaacaaagagtt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40329831 |
tgagttggattttgagttcttgggaaaccgtactggacaaccttacacagttcaaacaaacatttatgctcatggaaagggtgatagagaacaaagagtt |
40329732 |
T |
|
| Q |
311 |
aatctttggtttgatccttctgctgatttccacacttact |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
40329731 |
aatctttggtttgatccttctgctgatttccacacttact |
40329692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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