View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19878_low_65 (Length: 363)

Name: NF19878_low_65
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19878_low_65
NF19878_low_65
[»] chr1 (5 HSPs)
chr1 (264-361)||(2270823-2270920)
chr1 (19-133)||(21265900-21266014)
chr1 (93-133)||(2271048-2271088)
chr1 (19-133)||(336950-337064)
chr1 (21-83)||(37668527-37668589)
[»] chr5 (1 HSPs)
chr5 (19-133)||(42859673-42859787)
[»] chr3 (3 HSPs)
chr3 (306-361)||(29448170-29448225)
chr3 (28-133)||(15997343-15997448)
chr3 (19-130)||(46405546-46405657)
[»] chr2 (4 HSPs)
chr2 (306-361)||(35672861-35672916)
chr2 (19-133)||(40446326-40446440)
chr2 (19-86)||(12775913-12775980)
chr2 (19-61)||(16132329-16132371)
[»] chr7 (2 HSPs)
chr7 (19-96)||(12197407-12197484)
chr7 (19-133)||(10290349-10290462)
[»] chr8 (2 HSPs)
chr8 (19-130)||(42078438-42078549)
chr8 (19-133)||(21232919-21233033)
[»] chr4 (1 HSPs)
chr4 (19-131)||(10345639-10345751)
[»] scaffold0413 (1 HSPs)
scaffold0413 (19-133)||(7683-7797)
[»] scaffold0618 (1 HSPs)
scaffold0618 (19-130)||(5132-5243)


Alignment Details
Target: chr1 (Bit Score: 86; Significance: 5e-41; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 264 - 361
Target Start/End: Complemental strand, 2270920 - 2270823
Alignment:
Q  264 gacatagtcataataatgctacacgtttttgtttcttaattgcctaattacttggtttagtggccttgcttgggagaaatattagataacagcctatg 361  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2270920 gacatagtcataataatgctacacgtttttgttgcctaattgcctaattacttggtttagtggccttgcttgggagaaatattagataacaacctatg 2270823  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 21266014 - 21265900
Alignment:
Q  19 gttcaacactttattttatgtgtgagaaacttcacaaaatcttaggattcctgaatttggtttatcaactaaaattttatccatctattttatttttatt 118  Q
    |||||||| ||||||||||||| |||||||||| ||||||||| | |||||| | |||||||||| || | || ||   | ||||||||| |||||||||    
T  21266014 gttcaacaatttattttatgtgcgagaaacttcgcaaaatcttggtattccttactttggtttattaattgaatttgatttcatctatttcatttttatt 21265915  T
Q  119 aatctatttggtgtg 133  Q
    |||| ||||||||||    
T  21265914 aatcaatttggtgtg 21265900  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 2271088 - 2271048
Alignment:
Q  93 ttttatccatctattttatttttattaatctatttggtgtg 133  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  2271088 ttttattcatctattttatttttattaatctatttggtgtg 2271048  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 336950 - 337064
Alignment:
Q  19 gttcaacactttattttatgtgtgagaaacttcacaaaatcttaggattcctgaatttggtttatcaactaaaattttatccatctattttatttttatt 118  Q
    |||||||| ||||||||||||| ||||||||| ||||||||||   |||| | | |||||||||| || | ||  |   | ||||||||| |||||||||    
T  336950 gttcaacaatttattttatgtgcgagaaactttacaaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcatttttatt 337049  T
Q  119 aatctatttggtgtg 133  Q
    |||| ||||||||||    
T  337050 aatcaatttggtgtg 337064  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 37668589 - 37668527
Alignment:
Q  21 tcaacactttattttatgtgtgagaaacttcacaaaatcttaggattcctgaatttggtttat 83  Q
    |||||| ||||||||| ||| |||||||||||||||||||| | |||||| | ||||||||||    
T  37668589 tcaacaatttattttacgtgcgagaaacttcacaaaatcttggtattccttactttggtttat 37668527  T

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Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 42859673 - 42859787
Alignment:
Q  19 gttcaacactttattttatgtgtgagaaacttcacaaaatcttaggattcctgaatttggtttatcaactaaaattttatc-catctattttatttttat 117  Q
    |||||||| |||| ||||| || |||||||||||||||||||| | |||||| | |||||||||||| ||| ||||||||  ||||||||||||||||||    
T  42859673 gttcaacaatttaatttatatgcgagaaacttcacaaaatcttggcattcctta-tttggtttatcacctataattttatttcatctattttatttttat 42859771  T
Q  118 taatctatttggtgtg 133  Q
    ||||| ||||||||||    
T  42859772 taatcaatttggtgtg 42859787  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 306 - 361
Target Start/End: Original strand, 29448170 - 29448225
Alignment:
Q  306 cctaattacttggtttagtggccttgcttgggagaaatattagataacagcctatg 361  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  29448170 cctaattacttggtttagtggccttgcttgggagaaataatagataacaacctatg 29448225  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 15997448 - 15997343
Alignment:
Q  28 tttattttatgtgtgagaaacttcacaaaatcttaggattcctgaatttggtttatcaactaaaattttatccatctattttatttttattaatctattt 127  Q
    ||||||||||  |||||||| ||||||| ||||| | |||||| | ||| |||||| || | || ||   ||||||||||| ||||||||||||| ||||    
T  15997448 tttattttataagtgagaaatttcacaacatcttggtattccttactttagtttattaattgaatttgattccatctatttcatttttattaatcaattt 15997349  T
Q  128 ggtgtg 133  Q
    ||||||    
T  15997348 ggtgtg 15997343  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 46405657 - 46405546
Alignment:
Q  19 gttcaacactttattttatgtgtgagaaacttcacaaaatcttaggattcctgaatttggtttatcaactaaaattttatccatctattttatttttatt 118  Q
    |||||||| ||||||||||||| ||||||||| ||||||||||   |||| | | |||||||||| || | ||  |   | ||||||||| |||||||||    
T  46405657 gttcaacaatttattttatgtgcgagaaactttacaaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcatttttatt 46405558  T
Q  119 aatctatttggt 130  Q
    |||| |||||||    
T  46405557 aatcaatttggt 46405546  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 306 - 361
Target Start/End: Complemental strand, 35672916 - 35672861
Alignment:
Q  306 cctaattacttggtttagtggccttgcttgggagaaatattagataacagcctatg 361  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  35672916 cctaattacttggtttagtggccttgcttgggagaaataatagataacaacctatg 35672861  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 40446326 - 40446440
Alignment:
Q  19 gttcaacactttattttatgtgtgagaaacttcacaaaatcttaggattcctgaatttggtttatcaactaaaattttatccatctattttatttttatt 118  Q
    |||||||| ||||||||||||| ||||||||| ||||||||||   |||| | | |||||||||| || | ||  |   | ||||||||| |||||||||    
T  40446326 gttcaacaatttattttatgtgcgagaaactttacaaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcatttttatt 40446425  T
Q  119 aatctatttggtgtg 133  Q
    |||| ||||||||||    
T  40446426 aatcaatttggtgtg 40446440  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 12775980 - 12775913
Alignment:
Q  19 gttcaacactttattttatgtgtgagaaacttcacaaaatcttaggattcctgaatttggtttatcaa 86  Q
    |||||||| ||||||||||||| ||||||||| ||||||||||   |||| | | |||||||||||||    
T  12775980 gttcaacaatttattttatgtgcgagaaactttacaaaatcttgacattctttactttggtttatcaa 12775913  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 16132371 - 16132329
Alignment:
Q  19 gttcaacactttattttatgtgtgagaaacttcacaaaatctt 61  Q
    |||||||| ||||||||||||| |||||||||| |||||||||    
T  16132371 gttcaacaatttattttatgtgcgagaaacttcgcaaaatctt 16132329  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 12197484 - 12197407
Alignment:
Q  19 gttcaacactttattttatgtgtgagaaacttcacaaaatcttaggattcctgaatttggtttatcaactaaaatttt 96  Q
    |||||||| |||||||||| || |||||||||||||||||||| | |||||| | ||| |||||||||||||||||||    
T  12197484 gttcaacaatttattttatatgcgagaaacttcacaaaatcttggcattccttactttagtttatcaactaaaatttt 12197407  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 10290462 - 10290349
Alignment:
Q  19 gttcaacactttattttatgtgtgagaaacttcacaaaatcttaggattcctgaatttggtttatcaactaaaattttatccatctattttatttttatt 118  Q
    |||||||| ||||||||||||| |||||||||| ||||||||| | |||||| | ||||| |||| || | ||  |   | ||||||||| |||||||||    
T  10290462 gttcaacaatttattttatgtgcgagaaacttcgcaaaatcttggtattccttactttgg-ttattaattgaatctgatttcatctatttcatttttatt 10290364  T
Q  119 aatctatttggtgtg 133  Q
    |||| ||||||||||    
T  10290363 aatcaatttggtgtg 10290349  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 42078549 - 42078438
Alignment:
Q  19 gttcaacactttattttatgtgtgagaaacttcacaaaatcttaggattcctgaatttggtttatcaactaaaattttatccatctattttatttttatt 118  Q
    |||||||| ||||||||||  | |||||||||||||| ||||| | |||||| | |||||||||| || | || ||   ||||||||||| |||||||||    
T  42078549 gttcaacaatttattttataagcgagaaacttcacaacatcttggcattccttactttggtttattaattgaatttgattccatctatttcatttttatt 42078450  T
Q  119 aatctatttggt 130  Q
    |||| |||||||    
T  42078449 aatcaatttggt 42078438  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 21233033 - 21232919
Alignment:
Q  19 gttcaacactttattttatgtgtgagaaacttcacaaaatcttaggattcctgaatttggtttatcaactaaaattttatccatctattttatttttatt 118  Q
    |||||||| |||||||||| || |||||||||  ||||||||||| |||||| | ||||||| || || ||   |||  | ||| || || |||||||||    
T  21233033 gttcaacaatttattttatatgcgagaaactttccaaaatcttagtattccttactttggttcattaattaggttttctttcatatagttcatttttatt 21232934  T
Q  119 aatctatttggtgtg 133  Q
    |||| ||||||||||    
T  21232933 aatcaatttggtgtg 21232919  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 10345751 - 10345639
Alignment:
Q  19 gttcaacactttattttatgtgtgagaaacttcacaaaatcttaggattcctgaatttggtttatcaactaaaattttatccatctattttatttttatt 118  Q
    |||||||| |||||||| |  | |||||||||||||| ||||| | |||||| | |||||||||| || | || ||   ||||||||||| |||||||||    
T  10345751 gttcaacaatttattttctaagcgagaaacttcacaacatcttggcattccttattttggtttattaattgaatttgattccatctatttcatttttatt 10345652  T
Q  119 aatctatttggtg 131  Q
    |||| ||||||||    
T  10345651 aatcaatttggtg 10345639  T

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Target: scaffold0413 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 7683 - 7797
Alignment:
Q  19 gttcaacactttattttatgtgtgagaaacttcacaaaatcttaggattcctgaatttggtttatcaactaaaattttatccatctattttatttttatt 118  Q
    |||||||| ||||||||||||| |||||||||| ||||||||| | |||| | | ||| |||||| || | ||  |   | ||||||||| |||||||||    
T  7683 gttcaacaatttattttatgtgcgagaaacttcgcaaaatcttggtattctttactttagtttattaattgaatctgatttcatctatttcatttttatt 7782  T
Q  119 aatctatttggtgtg 133  Q
    |||| ||||||||||    
T  7783 aatcaatttggtgtg 7797  T

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Target: scaffold0618 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 5132 - 5243
Alignment:
Q  19 gttcaacactttattttatgtgtgagaaacttcacaaaatcttaggattcctgaatttggtttatcaactaaaattttatccatctattttatttttatt 118  Q
    |||||||| ||||||||||||| ||||||||| ||||||||||   |||| | | |||||||||| || | ||  |   | ||||||||| |||||||||    
T  5132 gttcaacaatttattttatgtgcgagaaactttacaaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcatttttatt 5231  T
Q  119 aatctatttggt 130  Q
    |||| |||||||    
T  5232 aatcaatttggt 5243  T

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