View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19878_low_66 (Length: 357)

Name: NF19878_low_66
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19878_low_66
NF19878_low_66
[»] chr7 (9 HSPs)
chr7 (16-290)||(22062696-22062970)
chr7 (16-291)||(22069153-22069430)
chr7 (23-290)||(22087656-22087923)
chr7 (23-183)||(22079984-22080144)
chr7 (67-122)||(6865587-6865642)
chr7 (282-333)||(22062605-22062655)
chr7 (113-181)||(16840208-16840276)
chr7 (113-181)||(16847291-16847359)
chr7 (119-167)||(20447423-20447471)
[»] chr4 (1 HSPs)
chr4 (119-155)||(11971848-11971884)
[»] chr5 (1 HSPs)
chr5 (91-182)||(29598357-29598448)
[»] chr6 (1 HSPs)
chr6 (49-115)||(6948685-6948751)
[»] chr2 (4 HSPs)
chr2 (49-167)||(5437650-5437767)
chr2 (91-168)||(553715-553792)
chr2 (91-156)||(20974731-20974796)
chr2 (91-155)||(10206213-10206277)


Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 22062970 - 22062696
Alignment:
Q  16 acaattgtgcggactgcatcttgtgtagttctgttaaggtgcagtttggcgaaggagggttcggatatgaggtacttccatgacttgctcacacacttca 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22062970 acaattgtgcggactgcatcttgtgtagttctgttaaggtgcagtttggcgaaggagggttcagatatgaggtacttccatgacttgctcacacacttca 22062871  T
Q  116 gccgcatgagagatttgacaggaaggaaggaaagcacttcgacaataagttcaccggggaggaatacctgcaactgagatggagggaggagattcatgat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22062870 gccgcatgagagatttgacaggaaggaaggaaagcacttcgacaataagttcaccggggaggaatacctgcaactgagatggagggaggagattcatgat 22062771  T
Q  216 ggagttttgttgttaccaaggctgtgccgtttggtgaattggagctgaaacgctgaaccctaatacttttgtttt 290  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22062770 ggagttttgttgttacaaaggctgtgccgtttggtgaattggagctgaaacgctgaaccctaatacttttgtttt 22062696  T

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Target: chr7; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 22069430 - 22069153
Alignment:
Q  16 acaattgtgcggactgcatcttgtgtagttctgttaaggtgcagtttggcgaaggagggttcggatatgaggtacttccatgacttgctcacacacttca 115  Q
    |||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22069430 acaattgtgctgactgcatcttgtgtagttctattaaggtgcaatttggcgaaggagggttcagatatgaggtacttccatgacttgctcacacacttca 22069331  T
Q  116 gccgcatgagagatttgacaggaaggaaggaaagcacttcgacaataagttcaccggggaggaatacctgcaactgagatggagggaggagattcatgat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  22069330 gccgcatgagagatttgacaggaaggaaggaaagcacttcgacaataagttcaccggggaggaatacctgcaactgagatggagggaggagattcatgtt 22069231  T
Q  216 ggagttttgttgttaccaaggctgtgccg--tttggtgaattggagctgaaacgctgaaccctaatacttttgttttt 291  Q
    |||||||||||||||||||||| ||||||  ||||| |||||||||||| |||||||||||||||||||| |||||||    
T  22069230 ggagttttgttgttaccaaggcggtgccgtttttggagaattggagctgtaacgctgaaccctaatacttgtgttttt 22069153  T

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Target: chr7; HSP #3
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 23 - 290
Target Start/End: Complemental strand, 22087923 - 22087656
Alignment:
Q  23 tgcggactgcatcttgtgtagttctgttaaggtgcagtttggcgaaggagggttcggatatgaggtacttccatgacttgctcacacacttcagccgcat 122  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||| |||| |||||||||||||||    
T  22087923 tgcggactgcattttgtgtagttctgttaaggtgcaatttggcgaagtagggttcggacatgaggtacttccatgacttactcaaacacttcagccgcat 22087824  T
Q  123 gagagatttgacaggaaggaaggaaagcacttcgacaataagttcaccggggaggaatacctgcaactgagatggagggaggagattcatgatggagttt 222  Q
    |||||||||||||| ||||||||||||||||||    ||||||||  ||||||||||| |||||||||||||||||||||||||||||||  ||||||||    
T  22087823 gagagatttgacagaaaggaaggaaagcacttctgtgataagttcgtcggggaggaatgcctgcaactgagatggagggaggagattcatattggagttt 22087724  T
Q  223 tgttgttaccaaggctgtgccgtttggtgaattggagctgaaacgctgaaccctaatacttttgtttt 290  Q
    | || |||||||  | | ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  22087723 tcttattaccaatacagcgccgtttggagaattggagctgaaacgctgaaccctaatacttttgtttt 22087656  T

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Target: chr7; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 23 - 183
Target Start/End: Complemental strand, 22080144 - 22079984
Alignment:
Q  23 tgcggactgcatcttgtgtagttctgttaaggtgcagtttggcgaaggagggttcggatatgaggtacttccatgacttgctcacacacttcagccgcat 122  Q
    ||||||||||||||||| ||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||    
T  22080144 tgcggactgcatcttgtttagttctcttaaggtgcaatttgacgaaggagggttcggatatgaggtacttccatgatttactcacacacttcagccgtat 22080045  T
Q  123 gagagatttgacaggaaggaaggaaagcacttcgacaataagttcaccggggaggaatacc 183  Q
    |||||||| ||||||||||||||||||||||||||||||||||||  | ||||||||||||    
T  22080044 gagagattggacaggaaggaaggaaagcacttcgacaataagttcgtcagggaggaatacc 22079984  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 122
Target Start/End: Original strand, 6865587 - 6865642
Alignment:
Q  67 aaggagggttcggatatgaggtacttccatgacttgctcacacacttcagccgcat 122  Q
    |||| ||||||||| |||||| ||||||||||||| |||||| ||||||| |||||    
T  6865587 aaggtgggttcggagatgagggacttccatgacttactcacatacttcagtcgcat 6865642  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 333
Target Start/End: Complemental strand, 22062655 - 22062605
Alignment:
Q  282 ttttgtttttgacaaaccctaatacctatgtaaaccctatctattccaccga 333  Q
    ||||||||||||||||||||||||||| | |||||||||| || ||||||||    
T  22062655 ttttgtttttgacaaaccctaatacct-tctaaaccctatttaatccaccga 22062605  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 16840208 - 16840276
Alignment:
Q  113 tcagccgcatgagagatttgacaggaaggaaggaaagcacttcgacaataagttcaccggggaggaata 181  Q
    |||| ||||| |||| ||| ||||||||||| ||||||||||| || ||||||||  | ||||||||||    
T  16840208 tcagtcgcataagagttttcacaggaaggaaagaaagcacttctacgataagttcgtcagggaggaata 16840276  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 16847291 - 16847359
Alignment:
Q  113 tcagccgcatgagagatttgacaggaaggaaggaaagcacttcgacaataagttcaccggggaggaata 181  Q
    |||| ||||| |||| ||| ||||||||||| ||||||||||| || ||||||||  | ||||||||||    
T  16847291 tcagtcgcataagagttttaacaggaaggaaagaaagcacttctacgataagttcgtcagggaggaata 16847359  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 20447471 - 20447423
Alignment:
Q  119 gcatgagagatttgacaggaaggaaggaaagcacttcgacaataagttc 167  Q
    |||| |||||||| || |||||||||||||||| ||||| |||||||||    
T  20447471 gcataagagatttaactggaaggaaggaaagcatttcgaaaataagttc 20447423  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 11971848 - 11971884
Alignment:
Q  119 gcatgagagatttgacaggaaggaaggaaagcacttc 155  Q
    |||||||||||||||| ||||||||||||||||||||    
T  11971848 gcatgagagatttgaccggaaggaaggaaagcacttc 11971884  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 29598357 - 29598448
Alignment:
Q  91 ttccatgacttgctcacacacttcagccgcatgagagatttgacaggaaggaaggaaagcacttcgacaataagttcaccggggaggaatac 182  Q
    ||||||||||||| ||||||| | || ||||| |||||||  ||||||||||| ||||| |||||  | || |||||| | |||||||||||    
T  29598357 ttccatgacttgcacacacaccttagtcgcatcagagattgcacaggaaggaatgaaaggacttctgcgatgagttcatcagggaggaatac 29598448  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 6948685 - 6948751
Alignment:
Q  49 ttaaggtgcagtttggcgaaggagggttcggatatgaggtacttccatgacttgctcacacacttca 115  Q
    |||||||||| |||||||||| |||| |||||||| |||   |||||||||||||  ||||||||||    
T  6948685 ttaaggtgcattttggcgaagtagggatcggatattagggttttccatgacttgcaaacacacttca 6948751  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 167
Target Start/End: Original strand, 5437650 - 5437767
Alignment:
Q  49 ttaaggtgcagtttggcgaaggagggttcggatatgaggtacttccatgacttgctcacacacttcagccgcatgagagatttgacaggaaggaaggaaa 148  Q
    |||||||||| |||| ||||  | |||||||| ||||||   |||||||||||||  ||||||||||   |||| ||| |||| ||||||| |||||| |    
T  5437650 ttaaggtgcattttgacgaaaaatggttcggagatgagggtgttccatgacttgcaaacacacttcatttgcataagatatttaacaggaa-gaaggata 5437748  T
Q  149 gcacttcgacaataagttc 167  Q
     ||||||||| ||||||||    
T  5437749 tcacttcgactataagttc 5437767  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 168
Target Start/End: Complemental strand, 553792 - 553715
Alignment:
Q  91 ttccatgacttgctcacacacttcagccgcatgagagatttgacaggaaggaaggaaagcacttcgacaataagttca 168  Q
    |||||||| ||||  ||||||||||  ||||| ||| |||  |||||||| ||||||||||||||||  |||||||||    
T  553792 ttccatgatttgcaaacacacttcattcgcataagatattcaacaggaagaaaggaaagcacttcgagtataagttca 553715  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 156
Target Start/End: Complemental strand, 20974796 - 20974731
Alignment:
Q  91 ttccatgacttgctcacacacttcagccgcatgagagatttgacaggaaggaaggaaagcacttcg 156  Q
    |||||||| |||||||||||||| ||  |||||||||| || || ||||||||||| || ||||||    
T  20974796 ttccatgatttgctcacacacttgagttgcatgagagaattaacgggaaggaaggataggacttcg 20974731  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 10206213 - 10206277
Alignment:
Q  91 ttccatgacttgctcacacacttcagccgcatgagagatttgacaggaaggaaggaaagcacttc 155  Q
    |||||||||||   ||| |||||||| ||||| |||||||| || |||||||| |||||||||||    
T  10206213 ttccatgacttagacacgcacttcagtcgcattagagatttcacgggaaggaaagaaagcacttc 10206277  T

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