View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_67 (Length: 357)
Name: NF19878_low_67
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_67 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 11675190 - 11674957
Alignment:
| Q |
17 |
caagcaaaaataattgaaatgcgctactcaaagtaccaaaaacttgacatacaaaaatgaaaaggttagtctaacattaaccagctctaatgcaaaggag |
116 |
Q |
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| T |
11675190 |
caagcaaaaataattgaaatgcactactcaaagtaccaaacacttgacatacaaaaatgaaaaggttagtctaacatcaaccagctctaatgcaaaggag |
11675091 |
T |
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| Q |
117 |
caactacaatggagatagacattcatgccaatatatgcatccaaaactcatatttatagaacaagtaaaatctattcgacatatatacttgatcctcggt |
216 |
Q |
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| T |
11675090 |
caactacaatggagatagacattcatgccaatatatgcatccaaaactcatatttatagaacaagt-aaatgtattcgacatatatacttgatccttggt |
11674992 |
T |
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| Q |
217 |
ataacggctacaaactgctacatcaatgtctggca |
251 |
Q |
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| T |
11674991 |
ataacagctacaaactgctacatcaatgtctggca |
11674957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 275 - 343
Target Start/End: Complemental strand, 11673541 - 11673473
Alignment:
| Q |
275 |
atccatatatacacatcataagtcataatttcatgtagacagagcatacatatgtgtggatgtttaaac |
343 |
Q |
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| T |
11673541 |
atccatgtatacacatcataagtcataatttcatgtagagagagcatacatatgtgtggatgtttaaac |
11673473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 28888350 - 28888439
Alignment:
| Q |
47 |
aagtaccaaaaacttgacatacaaaaatgaaaaggttagtctaacattaaccagctctaatgcaaaggagcaactacaatggagatagac |
136 |
Q |
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| T |
28888350 |
aagtaccaaacacttgacaaacaaaattaataaggttagtccaacacaaatcaactcttatataaacgagcaactacaatggagatagac |
28888439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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