View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_68 (Length: 354)
Name: NF19878_low_68
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_68 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 117 - 338
Target Start/End: Complemental strand, 45959892 - 45959673
Alignment:
| Q |
117 |
caaccaaaataatagtaatattaagttgtaagcactatgtttcatgaatatattttaacttcttttacctttataatcacaacttctttacaaaatcgac |
216 |
Q |
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| T |
45959892 |
caaccaaaataatagta-tattaagttgtaagcactatgtttcatgaatatattttaacttcttttacctttataatcacaacttctttacaa--tcgac |
45959796 |
T |
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| Q |
217 |
actcgaatagcttatggtgttttctactaaatagactacggtttaaagtgaccaagaataggataaggtatgttaaagaagctaacaaagtaaaaaca-t |
315 |
Q |
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|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
45959795 |
actcgaatagcttatggtgttttctactaaatcgactacaatttaaagtgaccaagaagaggataaggtatgttaaagaagctaacaaagtaaaaacatt |
45959696 |
T |
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| Q |
316 |
tccatggaattgagattggttct |
338 |
Q |
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||||| |||||||||||| |||| |
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| T |
45959695 |
tccatagaattgagattgattct |
45959673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 176 - 333
Target Start/End: Complemental strand, 45959676 - 45959520
Alignment:
| Q |
176 |
ttcttttacctttataatcacaacttctttacaaaatcgacactcgaatagcttatggtgttttctactaaatagactacggtttaaagtgaccaagaat |
275 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
45959676 |
ttcttttacctttataatcacaacttctttacaa--tcgacactcgaatagcttatggtgttttctactaaatcgactacagtttaaagtgaccaagaag |
45959579 |
T |
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| Q |
276 |
aggataaggtatgttaaagaagctaacaaagtaaaaaca-ttccatggaattgagattg |
333 |
Q |
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| T |
45959578 |
aagataaggtatgttaaagaagctaacaaagtaaaaacatttccatggaattgagattg |
45959520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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