View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_69 (Length: 354)
Name: NF19878_low_69
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_69 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 42743115 - 42742764
Alignment:
| Q |
1 |
attggtatgtcttcgaggtaacaacaatagagttgacaagggcgtggaagcttctcgtgtaggtgctgttggaatgattttggccaatgacgagggttca |
100 |
Q |
| |
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|||||||||||||| ||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
42743115 |
attggtatgtcttctaggtaacaatagtagagttgacaagggtgtggaagcttctcgtgtaggtgctgttggaatgattttggctaatgacgatttttca |
42743016 |
T |
|
| Q |
101 |
ggcggtgaaattatagctgacgctcatttgcttcccgcttcacatgttagctttaaagatggagatttaatttttaaatacgtcaataacaccaagtaat |
200 |
Q |
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||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||| | | ||||| ||||| |||||| |||||||||||| |
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| T |
42743015 |
ggcggtgaaattatacctgacgctcatgtgcttcccgcttcacatgttaactttaaagatggaaacgtcattttaaaatatgtcaattacaccaagtaat |
42742916 |
T |
|
| Q |
201 |
ttttcttccatgacgcgggcttcataactttttccatgcttcgattttatagtttttattactcatatactaaatttcatacatac----tataggtctc |
296 |
Q |
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|||||| |||||| ||||| |||||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||| | |||||||| |
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| T |
42742915 |
ttttctcccatgatatgggctccataactttttccatgatttgattttatagttttcattactcatatacttaatttcatacatacattatgtaggtctc |
42742816 |
T |
|
| Q |
297 |
ctgtagcttatattactagagttaagacacaattgggtgtaaaggcatctcc |
348 |
Q |
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|||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
42742815 |
ctgtagcttacattactagagttaaaacacaattgggtgtaaaggcatctcc |
42742764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 42752474 - 42752123
Alignment:
| Q |
1 |
attggtatgtcttcgaggtaacaacaatagagttgacaagggcgtggaagcttctcgtgtaggtgctgttggaatgattttggccaatgacgagggttca |
100 |
Q |
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| T |
42752474 |
attggtatgtcttctaggtaacaatagtagagttgacaagggtgtggaagcttctcgtgtaggtgctgttggaatgattttggctaatgacgatttttca |
42752375 |
T |
|
| Q |
101 |
ggcggtgaaattatagctgacgctcatttgcttcccgcttcacatgttagctttaaagatggagatttaatttttaaatacgtcaataacaccaagtaat |
200 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||| | | ||||| ||||| |||||| |||||||||||| |
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| T |
42752374 |
ggcggtgaaattatacctgacgctcatgtgcttcccgcttcacatgttaactttaaagatggaaacgtcattttaaaatatgtcaattacaccaagtaat |
42752275 |
T |
|
| Q |
201 |
ttttcttccatgacgcgggcttcataactttttccatgcttcgattttatagtttttattactcatatactaaatttcatacatac----tataggtctc |
296 |
Q |
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|||||| |||||| ||||| |||||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||| | |||||||| |
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| T |
42752274 |
ttttctcccatgatatgggctccataactttttccatgatttgattttatagttttcattactcatatacttaatttcatacatacattatgtaggtctc |
42752175 |
T |
|
| Q |
297 |
ctgtagcttatattactagagttaagacacaattgggtgtaaaggcatctcc |
348 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
42752174 |
ctgtagcttacattactagagttaaaacacaattgggtgtaaaggcatctcc |
42752123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 42761942 - 42761583
Alignment:
| Q |
1 |
attggtatgtcttcgaggtaacaacaatagagttgacaagggcgtggaagcttctcgtgtaggtgctgttggaatgattttggccaatgacgagggttca |
100 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||| |||||||| |
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| T |
42761942 |
attggtatgtcttcgaggtgacagtaatagagttgacaagggtgtggaagcttctcgtgtaggtgctattggaatgattttggctaatgataagggttca |
42761843 |
T |
|
| Q |
101 |
ggcggtgaaattatagctgacgctcatttgcttcccgcttcacatgttagctttaaagatggagatttaatttttaaatacgtcaataacaccaagtaat |
200 |
Q |
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|||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42761842 |
ggcggtgagattatagatgacgctcatgtgcttcccgcttcacatgttagctttaaagatggagatttaatttttaaatacgtcaataacacaaagtaat |
42761743 |
T |
|
| Q |
201 |
ttttcttccatgacgcgggcttcataactttttccatgcttcgattttatagtttttattactcatatac--------taaatttcatacatac----ta |
288 |
Q |
| |
|
|||||| | |||| |||| ||||||||||||||||| || ||||||||||||||||||| || ||||| | |||||||||||||| | |
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|
| T |
42761742 |
ttttctcctatgatacggggttcataactttttccatattttgattttatagtttttattattcgtatacatagaattttaatttcatacatacattatg |
42761643 |
T |
|
| Q |
289 |
taggtctcctgtagcttatattactagagttaagacacaattgggtgtaaaggcatctcc |
348 |
Q |
| |
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|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
42761642 |
taggtctcctgtagcttacattactagagttaaaacacaattgggtgtaaaggcatctcc |
42761583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 42716486 - 42716440
Alignment:
| Q |
38 |
aagggcgtggaagcttctcgtgtaggtgctgttggaatgattttggc |
84 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||| |||||||| |
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| T |
42716486 |
aagggtgtggaagctgctcgtgtaggtgctgttggaattattttggc |
42716440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 42768876 - 42768800
Alignment:
| Q |
8 |
tgtcttcgaggtaacaacaatagagttgacaagggcgtggaagcttctcgtgtaggtgctgttggaatgattttggc |
84 |
Q |
| |
|
||||||||||| |||| ||||| ||||||||| ||| ||||| || | | |||||||||||||||||||||||| |
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| T |
42768876 |
tgtcttcgaggcgacaatgatagaactgacaagggtgtgcaagctgctagggcaggtgctgttggaatgattttggc |
42768800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 23041301 - 23041640
Alignment:
| Q |
1 |
attggtatgtcttcgaggtaacaacaatagagttgacaagggcgtggaagcttctcgtgtaggtgctgttggaatgattttggccaatgacgagggttca |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| | ||||| || ||||||||||| |||||||||||||||||||||||||| |||||||||| |||| |
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| T |
23041301 |
attggtatgtcttcgaggtaacaatggtagagttaaaaagggtgtagaagcttctcgagtaggtgctgttggaatgattttggctaatgacgaggcttca |
23041400 |
T |
|
| Q |
101 |
ggcggtgaaattatagctgacgctcatttgcttcccgcttcacatgttagctttaaagatggagatttaatttttaaatacgtcaataacaccaagtaat |
200 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||| | | ||||| ||||| |||||| |||||||||||| |
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| T |
23041401 |
ggcggtgaaattatatctgacgctcatgtgcttcccgcttcacatgttaactttaaagatggaaacgtcattttaaaatatgtcaattacaccaagtaat |
23041500 |
T |
|
| Q |
201 |
ttttcttccatgacgcgggcttcataactttttccatgcttcgattttatagtttttattactcatatactaaatttcatacatactataggtctcctgt |
300 |
Q |
| |
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|||||| |||| | ||||| ||||||||||||||| ||| |||||||||||||| |||||||||||||| ||||| | |||||||||| | |
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| T |
23041501 |
ttttctcccattatatgggctccataactttttccatcctttgattttatagttttcattactcatatact--------tacattatgtaggtctcctat |
23041592 |
T |
|
| Q |
301 |
agcttatattactagagttaagacacaattgggtgtaaaggcatctcc |
348 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
23041593 |
agcttatattactagagttaaaacacaattgggtgtaaaggcatctcc |
23041640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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