View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_70 (Length: 351)
Name: NF19878_low_70
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_70 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 12 - 351
Target Start/End: Complemental strand, 39976435 - 39976096
Alignment:
| Q |
12 |
tagtacacatgttttaattaagttgatatgttatgtctaattccacctctccatgattatgacaggaagcttatgtggtaaacaatgaagaaaacaagaa |
111 |
Q |
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| T |
39976435 |
tagtacacatgttttaattaagttgatatgttatgtctaattccacctctccatgattatgacaggaagcttatgtggtaaacaatgaagaaaacaagaa |
39976336 |
T |
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| Q |
112 |
tagtccaaattcaatcatgccaagggacaaatatccaaagccattaatatttcatgatggaagattagcattcttgccaacaccattagcaacactctac |
211 |
Q |
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| T |
39976335 |
tagtccaaattcaatcatgccaagggacaaatatccaaagccattaatatttcatgatggaagattagcattcttgccaacaccattagcaacactctac |
39976236 |
T |
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| Q |
212 |
atgttcatgtggctaccaattggaattattttagcaatttatagaatccttcttggtattttcctaccttacaaattagcacttgaattgggagtttgga |
311 |
Q |
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| T |
39976235 |
atgttcatgtggctaccaattggaattattttagcaatttatagaatacttcttggtattttccttccttacaaattagcacttgaattaggagtttgga |
39976136 |
T |
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| Q |
312 |
gtggcatagatctaaaaatcaaaggcactatccctaaaaa |
351 |
Q |
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| T |
39976135 |
gtggcatagatctaaaaatcaaaggcactatccctaaaaa |
39976096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 64 - 337
Target Start/End: Original strand, 28538296 - 28538563
Alignment:
| Q |
64 |
atgattatgacaggaagcttatgtggtaaacaatgaagaaaacaagaatagtccaaattcaatcatgccaagggacaaatatccaaagccattaatattt |
163 |
Q |
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| T |
28538296 |
atgattatgacaggaagcttatgtgatgaacaatgaaggaaaaaa---tagtcaaaactcagtgatgccaagg-agaaatatccaaagccattagtattt |
28538391 |
T |
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| Q |
164 |
catgatggaagattagcattcttgccaacaccattagcaacactctacatgttcatgtggctaccaattggaattattttagcaatttatagaatccttc |
263 |
Q |
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| T |
28538392 |
catggtg--agactagcattcttgcctacaccctcagcaactttctgcatgttcgtgtggattccaattggaattacttttgccatttatagaacccttc |
28538489 |
T |
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| Q |
264 |
ttggtattttcctaccttacaaattagcacttgaattgggagtttggagtggcatagatctaaaaatcaaaggc |
337 |
Q |
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| T |
28538490 |
ttggtaatttccttccttacaaatgggcccttgcattaggagtttgaagtggtacagatttgaatatcaaaggc |
28538563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 114 - 225
Target Start/End: Complemental strand, 16148123 - 16148012
Alignment:
| Q |
114 |
gtccaaattcaatcatgccaagggacaaatatccaaagccattaatatttcatgatggaagattagcattcttgccaacaccattagcaacactctacat |
213 |
Q |
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| T |
16148123 |
gtccaagttcaatcatgccaaaggaaaagtatccaaagccattaatatttcatgatggaagactagcatttttccctacaccttcatcaactctctacat |
16148024 |
T |
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| Q |
214 |
gttcatgtggct |
225 |
Q |
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| T |
16148023 |
gttcatgtggct |
16148012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 122 - 238
Target Start/End: Original strand, 16194826 - 16194942
Alignment:
| Q |
122 |
tcaatcatgccaagggacaaatatccaaagccattaatatttcatgatggaagattagcattcttgccaacaccattagcaacactctacatgttcatgt |
221 |
Q |
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| T |
16194826 |
tcaattatgccaagggaaaagtatccaaagccattaatatttcatgatggcaggctagcattcttccctacaccttcatcaactctctacatgttcatgt |
16194925 |
T |
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| Q |
222 |
ggctaccaattggaatt |
238 |
Q |
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| T |
16194926 |
ggcttccaatgggaatt |
16194942 |
T |
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