View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_74 (Length: 341)
Name: NF19878_low_74
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_74 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 3 - 323
Target Start/End: Original strand, 13948799 - 13949119
Alignment:
| Q |
3 |
gatgtcgaagaatatggttcaacactccaagtaatccatgtgttcagcccatgttccccatttaggccatcaaagccactgtcatgggaagaaagtgtcc |
102 |
Q |
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| T |
13948799 |
gatgtccaagacaatggttcaacactccaagtaatccatgtgttcagcccatgttccccatttaggccatcaaagccactgtcatgggaagaaagtgtcc |
13948898 |
T |
|
| Q |
103 |
tccaaatgcaagccaaagacacaactagacttcaattccttgatagtttagtagctagaaaatctattgtacctattgcttctggtagacaaatcataca |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13948899 |
tccaaatgcaagccaaagacacaactagacttcaattccttgatagtttagtagctagaaaatctattgtacctattgcttctggtagacaaatcataca |
13948998 |
T |
|
| Q |
203 |
gagtccaacttacattgttagggctaaaattggtactccacctcaaactttgcttttggctatggatactagtaatgatgctgcttggattccttgtact |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13948999 |
gagtccaacttacattgttagggctaaaattggtactccacctcaaactttgcttttggctatggatactagtaatgatgctgcttggattccttgtact |
13949098 |
T |
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| Q |
303 |
gcttgtgatggttgtgcttca |
323 |
Q |
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||||||||||||||||||||| |
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| T |
13949099 |
gcttgtgatggttgtgcttca |
13949119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 3 - 323
Target Start/End: Complemental strand, 4039142 - 4038823
Alignment:
| Q |
3 |
gatgtcgaagaatatggttcaacactccaagtaatccatgtgttcagcccatgttccccatttaggccatcaaagccactgtcatgggaagaaagtgtcc |
102 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
4039142 |
gatgtccaagacaatggttcaacactccaagtaatccatgtgttcagcccatgttccccatttaggccatcaa-gccactttcatgggaagaaagtgtcc |
4039044 |
T |
|
| Q |
103 |
tccaaatgcaagccaaagacacaactagacttcaattccttgatagtttagtagctagaaaatctattgtacctattgcttctggtagacaaatcataca |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
4039043 |
tccaaatgcaagccaaagacacaactagacttcaattccttgatagtttggtagctagaaaatcagttgtacctattgcttctggtagacagatcataca |
4038944 |
T |
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| Q |
203 |
gagtccaacttacattgttagggctaaaattggtactccacctcaaactttgcttttggctatggatactagtaatgatgctgcttggattccttgtact |
302 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4038943 |
gagtccaacttacattgtaagggctaaaattggtactccacctcaaactttgcttttggctatggatactagtaatgatgctgcttggattccttgcact |
4038844 |
T |
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| Q |
303 |
gcttgtgatggttgtgcttca |
323 |
Q |
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||||||||||||||||||||| |
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| T |
4038843 |
gcttgtgatggttgtgcttca |
4038823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 317
Target Start/End: Original strand, 14701765 - 14702066
Alignment:
| Q |
16 |
atggttcaacactccaagtaatccatgtgttcagcccatgttccccatttaggccatcaaagccactgtcatgggaagaaagtgtcctccaaatgcaagc |
115 |
Q |
| |
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|||| ||||||||| |||| ||||| | ||||||| |||||| ||||| | |||||||| ||| |||||||||||||||||||||| | | ||||| |
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| T |
14701765 |
atggctcaacactcaaagtgttccatatcttcagccaatgttctccattcaaaccatcaaaaccaatgtcatgggaagaaagtgtcctaaacctacaagc |
14701864 |
T |
|
| Q |
116 |
caaagacacaactagacttcaattccttgatagtttagtagctagaaaatctattgtacctattgcttctggtagacaaatcatacagagtccaacttac |
215 |
Q |
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|||||| | ||||| | |||| | | || ||||| ||||| ||||| ||||||| ||||| || | |||||||| || || |||||||| ||| |
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| T |
14701865 |
taaagaccaagctagaatgcaatacttctccagcttagttgctaggaaatcagttgtaccaattgcatcagcaagacaaataattcaaagtccaacatac |
14701964 |
T |
|
| Q |
216 |
attgttagggctaaaattggtactccacctcaaactttgcttttggctatggatactagtaatgatgctgcttggattccttgtactgcttgtgatggtt |
315 |
Q |
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||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| | | ||||| ||||| |
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| T |
14701965 |
attgttaaggctaagtttggtactccacctcaaactttgcttttggctttggatactagtagtgatgctgcttggattccttgttccggttgtgttggtt |
14702064 |
T |
|
| Q |
316 |
gt |
317 |
Q |
| |
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|| |
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|
| T |
14702065 |
gt |
14702066 |
T |
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