View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_75 (Length: 341)
Name: NF19878_low_75
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_75 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 46238315 - 46237986
Alignment:
| Q |
1 |
ttcagatcctgctaatattgagcatatactggcgccgaacttctcaaactatggcaaggtataactcatagttactaataagtcgacatgtcattaaagc |
100 |
Q |
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| T |
46238315 |
ttcagatcctgctaatattgagcatatactggcgacgaacttctcaaactatggcaaggtataactcatagttactaatacgtcgacatgtcattaaagc |
46238216 |
T |
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| Q |
101 |
gagaatgttccccctaggtttggcccaaacatttgttggactgcgaccggggtgctggaggcaacttcaatttacgcttggtccaaacgtggttaatgac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46238215 |
gagaatgttccccctaggtttggcccaaacatttgttggactgcgaccggggtgctggaggcaacttcaatttacgcttggtccaaacgtggttaatgac |
46238116 |
T |
|
| Q |
201 |
atttaagtcgtggttcatggtgttgaatggatgtttaatgatctgcaacatattgttatatttactatccatccactaaacataattaactatatatttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
46238115 |
atttaagtcgtggttcatggtgttgaatggatgtttaatgatctccaacatattgttatatttactatccatccactaaacataatttactatatatttg |
46238016 |
T |
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| Q |
301 |
aacagccctccgtccatctaaattattcat |
330 |
Q |
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|||||||||||| ||||||||||||||||| |
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| T |
46238015 |
aacagccctccgaccatctaaattattcat |
46237986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 46164871 - 46165158
Alignment:
| Q |
1 |
ttcagatcctgctaatattgagcatatactggcgccgaacttctcaaactatggcaaggtataactcatagttactaataagtcgacatgtcattaaagc |
100 |
Q |
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||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| | ||| |
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| T |
46164871 |
ttcagatcctgctaatattgagcatatgatggcgacgaacttctcaaactatggcaaggtataactcgtagttactaataaatcgatatgtcacttaaga |
46164970 |
T |
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| Q |
101 |
gagaatgttccccctaggtttggcccaaacatttgttggactgcgaccggggtgctggagg-caacttcaatttacgcttggtccaaacgtggttaatga |
199 |
Q |
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||||||||||||||||||||||||||||| ||||||||| | |||| | ||| || || |||||| |||| | ||||||||| |||||| |||||| |
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| T |
46164971 |
tagaatgttccccctaggtttggcccaaacttttgttggattccgactagaatgcggggggaaaacttccatttgcacttggtccagacgtgg-taatga |
46165069 |
T |
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| Q |
200 |
catt-taagtcgtggttcatggtgttgaatggatgtttaatgatctgcaacatattgttatatttactatccatccactaaacataatt |
287 |
Q |
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|||| |||| ||||||||| ||||||| |||||| ||||||| ||| |||||||||||||||||||||| ||| ||||||||||||| |
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| T |
46165070 |
cattcaaagttgtggttcattgtgttgattggatggttaatgaattgcgacatattgttatatttactatcgatctactaaacataatt |
46165158 |
T |
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