View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_78 (Length: 333)
Name: NF19878_low_78
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_78 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 167 - 333
Target Start/End: Complemental strand, 32685520 - 32685354
Alignment:
| Q |
167 |
acttgtaatgttttttatgcaaacatgaaaattgatttcaaagaaaaaaggtgtatgcaaagttttttatgttggttgagttaagtttgtaattgactgc |
266 |
Q |
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| T |
32685520 |
acttgtaatgttttttatgcaaacatgaaaattgatttcaaagaaaaaaggtgtatgcaaagttttttatgttggttgagttaagtttgtaattgactgc |
32685421 |
T |
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| Q |
267 |
attgctcttattctccagctccaaatgctaatggaagttcattgcaaaggtatcaccatgacacaat |
333 |
Q |
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| T |
32685420 |
attgctcttattctccagctccaaatgctaatggaagttcattgcaaaggtatcaccatgacacaat |
32685354 |
T |
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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 32685622 - 32685577
Alignment:
| Q |
13 |
aatatgaggcaatcttttctaccaataccttatatacaaggtaaat |
58 |
Q |
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| T |
32685622 |
aatatgaggcaatcctttctaccaataccttatatacaaggtaaat |
32685577 |
T |
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