View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_79 (Length: 329)
Name: NF19878_low_79
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_79 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 15 - 315
Target Start/End: Original strand, 20344214 - 20344514
Alignment:
| Q |
15 |
caaaggtgcgttatattttaggaatgttgtgggcagctaggttatccttcaatagttaacttaggacctttcaagttattatcccttattgcttcttgat |
114 |
Q |
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| T |
20344214 |
caaaggtgcgttatattttaggaatgttgtgggcagctaggttctccttcaatagttaacttaggacctttcgagttattatcccttattgcttcttgat |
20344313 |
T |
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| Q |
115 |
tagtcgccatgtttggagcagctgaagatgtagatgcatacattctcttctttatgtttttcttgcaagttgccaaaattatctaatggaaaaagagaaa |
214 |
Q |
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| T |
20344314 |
tagtcgccatgtttggagcagctgaagatgtagatgcatacattctcttctttatgtttttcttgcaagttgccaaaattatctaatggaaaaagagaaa |
20344413 |
T |
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| Q |
215 |
gttttagtaagtgtgtaacaatggatattaaaacaattcaacacaatgacgttaaagatttgtattttattcactactgttagtttagtcgtgataaata |
314 |
Q |
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| T |
20344414 |
gttttagtaagtgtgtaacaatggatattaaaacaattcaacacaatgacgttaaagatttgtattttattcactactgttagtttagtcgtgataaata |
20344513 |
T |
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| Q |
315 |
t |
315 |
Q |
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| T |
20344514 |
t |
20344514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 257
Target Start/End: Original strand, 18200990 - 18201066
Alignment:
| Q |
181 |
aagttgccaaaattatctaatggaaaaagagaaagttttagtaagtgtgtaacaatggatattaaaacaattcaaca |
257 |
Q |
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| T |
18200990 |
aagttcccaaaacaatctgatggaaaaagagaaactttgagtaagtgtgtgacaatggctatcaaatcaatgcaaca |
18201066 |
T |
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