View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_80 (Length: 325)
Name: NF19878_low_80
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_80 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 325
Target Start/End: Original strand, 52049930 - 52050237
Alignment:
| Q |
13 |
aatatcccaatacctacaatttcattggtaaaccaaaacaccaagaacgtaataataagttgaaattaagttggtgtacgtaccctctatcagattcgtg |
112 |
Q |
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| T |
52049930 |
aatatcccaatacctacaatttcattggtaaaccaaaacaccaagaacgtaataataagttgaaattaagttgttgtacgtaccctctatcagattcgtg |
52050029 |
T |
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| Q |
113 |
gttaataatttcgagcaaattatcgagtccattatattgaattccagtaacacatccttctgggtttgatatattgacttgtactatgtcattatcaatt |
212 |
Q |
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| T |
52050030 |
gttattaatttcgagcaaattatcgagtccattatattgaattccagtaacacatccttctgggtttgatatattgacttgtactatgtcattatcaatt |
52050129 |
T |
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| Q |
213 |
accacctaaacagaacnnnnnnnntatacaacatattttattctaagttcattgccttagaaattaaatgttatcctaaaagatcacttttaaataaaaa |
312 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
52050130 |
accacctaaacagaacaaaaaaaatatacaacatattttattctaagttcattgccttag-----aaatgttatcctaaaagatcacttttaaataaaaa |
52050224 |
T |
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| Q |
313 |
taataaaacatat |
325 |
Q |
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| T |
52050225 |
taataaaacatat |
52050237 |
T |
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