View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_81 (Length: 322)
Name: NF19878_low_81
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_81 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 17785151 - 17785456
Alignment:
| Q |
1 |
aatttgagaaggaaatctttttagacattgcatgctttttcaaaggatacagactaagtgatatcttgaacatactatgtagtggtcgtggcttcgaccc |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17785151 |
aatttgtgaaggaaatctttttagacattgcatgcttcttcaaaggatacagactaagtgatatcttgaacatactatgtagtggtcgtgacttcgaccc |
17785250 |
T |
|
| Q |
101 |
agactatgctattcaggtattggttgataagagtctgataaaaatcgatgatcgtcatgtgaggctgcatgacatgattgaagatatgggtagagaaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17785251 |
agactatgctattcaggtattggttgataagagtctgataaaaatcgatgatcgtcatgtgaggctgcatgacatgattgaagatatgggtagagaaatt |
17785350 |
T |
|
| Q |
201 |
gtgagactggaatcacccacaaagccaggtgaacgcagtagattatgattctacaaagatattcttaatgtctttaaagagaacaaggtatgtgaaggga |
300 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17785351 |
gtgagactggaatcacccgcaaagccaggtgaacgcagtagattatggttctacaaagatattcttaatgtctttaaagagaacaaggtatgtgaaggga |
17785450 |
T |
|
| Q |
301 |
ctagtg |
306 |
Q |
| |
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|||||| |
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| T |
17785451 |
ctagtg |
17785456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 17802446 - 17802745
Alignment:
| Q |
1 |
aatttgagaaggaaatctttttagacattgcatgctttttcaaaggatacagactaagtgatatcttgaacatactatgtagtggtcgtggcttcgaccc |
100 |
Q |
| |
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||||||| |||||||||||||||||||| | ||||||||||||||||||| |||||||||| || |||||||| || |||||| ||||||| || ||| |
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| T |
17802446 |
aatttgaaaaggaaatctttttagacatcacttgctttttcaaaggatacaaactaagtgatgtcatgaacatattacatagtggccgtggctacgcccc |
17802545 |
T |
|
| Q |
101 |
agactatgctattcaggtattggttgataagagtctgataaaaatcgatgatcgtcatgtgaggctgcatgacatgattgaagatatgggtagagaaatt |
200 |
Q |
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| T |
17802546 |
agactatgctgtccaggtcttgattgataagagtctaataaaaatgaatgaatatcgtgtgaggatacatgacatgattgaagatatgggtagagaaatt |
17802645 |
T |
|
| Q |
201 |
gtgagactggaatcacccacaaagccaggtgaacgcagtagattatgattctacaaagatattcttaatgtctttaaagagaacaaggtatgtgaaggga |
300 |
Q |
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||||| |||||||||||| | |||||||||| |||||||||||||| ||| ||||||||||||| |||| | ||||||||||||||| ||||||||| |
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| T |
17802646 |
gtgaggctggaatcaccctcgaagccaggtggccgcagtagattatggttcaccaaagatattcttcatgttctcaaagagaacaaggtacgtgaaggga |
17802745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 17791497 - 17791792
Alignment:
| Q |
1 |
aatttgagaaggaaatctttttagacattgcatgctttttcaaaggatacagactaagtgatatcttgaacatactatgtagtggtcgtggcttcgaccc |
100 |
Q |
| |
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|||||||||||||||||||||||||| |||| ||||| ||||||||| | |||||||| || ||||||||||||| ||||||||||||| ||| |
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| T |
17791497 |
aatttgagaaggaaatctttttagaccttgcttgcttcttcaaaggagcaaagttaagtgatgtcaagaacatactatgttgtggtcgtggcttttcccc |
17791596 |
T |
|
| Q |
101 |
agactatgctattcaggtattggttgataagagtctgataaaaatcgatgatcgtcatgtgaggctgcatgacatgattgaagatatgggtagagaaatt |
200 |
Q |
| |
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|||||||||||| ||||| ||| |||| ||||||||||||||| | || || | ||| | ||||||||||||||||||||||||||||||||||| |
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| T |
17791597 |
agactatgctatccaggtgttgattgacaagagtctgataaaatttgaagactatagtgtcaaaatgcatgacatgattgaagatatgggtagagaaatt |
17791696 |
T |
|
| Q |
201 |
gtgagactggaatcacccacaaagccaggtgaacgcagtagattatgattctacaaagatattcttaatgtctttaaagagaacaaggtatgtgaa |
296 |
Q |
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||| | |||||| ||||| ||||||| |||||||||||||||||||| |||| ||||||||||||| | || || ||||| ||||||||||||||| |
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| T |
17791697 |
gtgcggctggaagcaccctcaaagccgggtgaacgcagtagattatggttctccaaagatattcttcacgttttcaaagaaaacaaggtatgtgaa |
17791792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 98 - 292
Target Start/End: Original strand, 17818017 - 17818218
Alignment:
| Q |
98 |
cccagactatgctattcaggtattggttgataagagtctgataaaaatcgatgatcgtcatgtgaggctgcatgacatgattgaagatatgggtagagaa |
197 |
Q |
| |
|
|||||||||| || | ||||| || ||||||||||||| |||||||| ||||| || ||||||| ||||| |||||||||||||||||| | ||||| |
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| T |
17818017 |
cccagactatcctgtccaggtgatgattgataagagtctaataaaaattgatgaatatcgtgtgaggatgcatcacatgattgaagatatggatcgagaa |
17818116 |
T |
|
| Q |
198 |
attgtgagactgg-------aatcacccacaaagccaggtgaacgcagtagattatgattctacaaagatattcttaatgtctttaaagagaacaaggta |
290 |
Q |
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||||| || |||| |||||||| | ||||||||||| ||||||||| |||| |||||||||| |||| || ||||||| |||||||| |||||| |
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| T |
17818117 |
attgtcaggctggacgctggaatcaccctcgaagccaggtgaccgcagtagactatggttctacaaagttattattcatgtcttcaaagagaaaaaggta |
17818216 |
T |
|
| Q |
291 |
tg |
292 |
Q |
| |
|
|| |
|
|
| T |
17818217 |
tg |
17818218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 265
Target Start/End: Original strand, 17788497 - 17788598
Alignment:
| Q |
166 |
tgcatgacatgattgaagatatgggtagagaaattgtgagactggaa--tcacccacaaagccaggtgaacgcagtagattatgattctacaaagatatt |
263 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| | |||||| ||||| ||||| | ||| |||| ||||| ||||| |||| |||||||||| |
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| T |
17788497 |
tgcatgacatgattaaagatatgggtagagaaattgtgcggctggaagcacaccctcaaagtcgggtaaacgtagtaggttatggttctccaaagatatt |
17788596 |
T |
|
| Q |
264 |
ct |
265 |
Q |
| |
|
|| |
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|
| T |
17788597 |
ct |
17788598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 6140408 - 6140368
Alignment:
| Q |
6 |
gagaaggaaatctttttagacattgcatgctttttcaaagg |
46 |
Q |
| |
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||||||||||| ||| |||||||||||| |||||||||||| |
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| T |
6140408 |
gagaaggaaatgtttctagacattgcattctttttcaaagg |
6140368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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