View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19878_low_85 (Length: 314)
Name: NF19878_low_85
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_85 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 46238312 - 46238569
Alignment:
| Q |
1 |
tgaagtgtacacttcacttctattgaagctaagcaacctataagtttttcgtttgcttgtgatgtcagtcgagtactcaagcagcctatgaaagttgaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46238312 |
tgaagtgtacacttcacttctattgaagctaagcaacctataaatttttcgtttgcttgtgatgtcagtcgagtactcaagcagcctatgaaagttgaac |
46238411 |
T |
|
| Q |
101 |
agttcgtgcaagactgtgccagcaacagggtgatattttcttttcttgtcaaaatttctaatgccatggattttgatgataaaaccagctaaaccaattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46238412 |
agttcgtgcaagactgtgccagcaacagggtgatattttcttttcttgtcaaaatttctaatgccatggattttgatgataaaaccagctaaaccaattg |
46238511 |
T |
|
| Q |
201 |
ctattagtattggaaagagaggtttcagtgcaaagagaaaatcaatgaattccattgc |
258 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
46238512 |
ctattagtattggaaaaagaggtttcattgcaaagagaaaatcaatgaattccattgc |
46238569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 46164874 - 46164617
Alignment:
| Q |
1 |
tgaagtgtacacttcacttctattgaagctaagcaacctataagtttttcgtttgcttgtgatgtcagtcgagtactcaagcagcctatgaaagttgaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
46164874 |
tgaagtgtacacttcacttctattaaagctaagcaacctataagtttttcttttgcttgtgaggtcagtcatgtactcaagcagcctatgaaagttgaac |
46164775 |
T |
|
| Q |
101 |
agttcgtgcaagactgtgccagcaacagggtgatattttcttttcttgtcaaaatttctaatgccatggattttgatgataaaaccagctaaaccaattg |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
46164774 |
agttgatgcaagactgtgccagcaacagggtgatatcttcttttcttgtcaaaaaatctactgccatggattttgatgataaaaccagctaaagcaattg |
46164675 |
T |
|
| Q |
201 |
ctattagtattggaaagagaggtttcagtgcaaagagaaaatcaatgaattccattgc |
258 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
46164674 |
ctattagtattggaaaaagaggtttcagtgcaaagagaaaatcaatgaatttcattgc |
46164617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University