View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_86 (Length: 310)
Name: NF19878_low_86
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_86 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 48 - 300
Target Start/End: Complemental strand, 32773392 - 32773140
Alignment:
| Q |
48 |
aaaaaatcgtcatttgagtgggtgggccgtgggtgtaaactacatgaactgtagttaagcatgaactaaaaaatttgaacttaaaacctatgtctttgtt |
147 |
Q |
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| T |
32773392 |
aaaaaatcatcatttgagtgggtgggccgtgggtgtaaactacatgaactgtagttaagcatgaactaaaaaatttgaacttaaaacctatgtctttatt |
32773293 |
T |
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| Q |
148 |
atgtaaagaaaactctagaattatcgaagattcatattcgaacaataaatctgggtacaatttcttttgttctttgaatttcttattatcaaataaggca |
247 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32773292 |
atgtctagaaaactctagaattatcgaagattcatattcgaacaataaatctgggtacaatttcttttgttcttcgaatttcttattatcaaataaggca |
32773193 |
T |
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| Q |
248 |
attaggttgttaaaaaattcccaaattttgttctatctttttggttgcctatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32773192 |
attaggttgttaaaaaattcccaaattttgttctttctttttggttgcctatg |
32773140 |
T |
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