View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_87 (Length: 309)
Name: NF19878_low_87
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_87 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 296
Target Start/End: Complemental strand, 10633220 - 10632930
Alignment:
| Q |
10 |
agaatgtttgagaata--atttccaatgagttttaaaagtagcttatgcaaaaggcataaaagttttaatcattatata--ctctcaaagataattctca |
105 |
Q |
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| T |
10633220 |
agaatgtttgagaatataatttccaatgagttttaaaagtagcttatgcaaaaggcataaaagttttaatcattatatatactctcaaagataattctca |
10633121 |
T |
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| Q |
106 |
caatgattacattaattcatgcctttactaaagcatctaaagattatcattggacaagaaacatcatgtgaaaataccacatgaatcgcaagaagtggta |
205 |
Q |
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| T |
10633120 |
caatgattatattaattcatgcctttactaaagcatctaaagattatcattggacaacaaacatcatgtgaaaataccacatgaatcgcaagaagtggta |
10633021 |
T |
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| Q |
206 |
tcaacaaaagattttgagattgcattgattgatcaagaagttattatcctctcatataaaagagaaacattatcaactcttatgaaataat |
296 |
Q |
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| T |
10633020 |
tcaacaaaagattttgagattgcattgattgatcaagaagttattatcctttcatataaaagagaaacattatcaactcttatgaaataat |
10632930 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 296
Target Start/End: Complemental strand, 4269833 - 4269748
Alignment:
| Q |
205 |
atcaacaaaagattttgagattgcattgattgatcaagaagttattatcctctcatataaaagagaaacattatcaactcttatgaaataat |
296 |
Q |
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| T |
4269833 |
atcaacaaaagattttgaggttgg-----ttgaccatgaatttattatcctctcatataaaaga-aaacattctgaacttttatgaaataat |
4269748 |
T |
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