View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_88 (Length: 306)
Name: NF19878_low_88
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_88 |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 155 - 287
Target Start/End: Complemental strand, 24400139 - 24400007
Alignment:
| Q |
155 |
ttgttcggcttgtgtattatctattatcaataatttaggttgaacagctacatgatgcaaatttggacacttggtaaatcttgaatgacatatattattt |
254 |
Q |
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| T |
24400139 |
ttgttcggcttgtgtattatctattatcaataatttaggttgaacagctacatgatgcaaatttggacacttggtaaatcttgaatgacatatattattt |
24400040 |
T |
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| Q |
255 |
cctaatggaaatgatcttcaccatggaaacatt |
287 |
Q |
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| T |
24400039 |
cctaatggaaatgatcttcaccatggaaccatt |
24400007 |
T |
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Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 24400222 - 24400135
Alignment:
| Q |
11 |
cacagacatatcttagggaactggataagttttgtatcgatgaccgatgggacaaaaacaagtcaatgcatatggttatgtcattgtt |
98 |
Q |
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| T |
24400222 |
cacacacatatcttagggaactggataagttttgtatcgatggccgatgggacaaaaacaagtcaatgcatatggttatgtcattgtt |
24400135 |
T |
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