View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_9 (Length: 603)
Name: NF19878_low_9
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 13753520 - 13753299
Alignment:
| Q |
15 |
caaaggcaccatacaaattccataatgatttccaatctttattacagaaaaatcataagacgaattttctttgttcccagattttagtgtatcatgttca |
114 |
Q |
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| T |
13753520 |
caaaggcacgatacaaattccataatgatttccaatctttattacagaaaaatcataagacgaattttctttgttcccagattttagtgtatcatgttca |
13753421 |
T |
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| Q |
115 |
aagcatccccctcctcaattaacttctgatcatatttactggtctatttgtaccgataatataaagtttgttgaaagactaataacctgttaggtactgc |
214 |
Q |
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| T |
13753420 |
aagcatcccc-tcctcaaataacttctgatcatatttactggtctatttgtactgataatataaagtttgttgaaagactaataacctgttaggtactgc |
13753322 |
T |
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| Q |
215 |
gttgtgtttctcaaaaccattgt |
237 |
Q |
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| T |
13753321 |
gttgtgtttctcaaaaccattgt |
13753299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 238 - 434
Target Start/End: Complemental strand, 13753218 - 13753017
Alignment:
| Q |
238 |
tataggaaacacagaactaaacaatcactaatctttcaaatttt-----tagtatgagttccttgaagaaatagaaatttccttaacttggaatgtgtgt |
332 |
Q |
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| T |
13753218 |
tataggaaacacataactaaacaatcactaatctttcaaattttggttatagtatgagttccttgaataaatagaaatttccttaacttgaaatgtgtgt |
13753119 |
T |
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| Q |
333 |
gattttacttgatagaaacaagcatcaatttataaattattttgatatatataaatacatcaaagtttacacactcataatgtaataggaagtaacatct |
432 |
Q |
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| T |
13753118 |
gattttacttgatagaaacaagcatcaatttataaattattttgatacatataagtacatcaaagtctacacactcataatgtaatagaaagtaacatct |
13753019 |
T |
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| Q |
433 |
tc |
434 |
Q |
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| T |
13753018 |
tc |
13753017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 468 - 588
Target Start/End: Complemental strand, 13753013 - 13752893
Alignment:
| Q |
468 |
aactcagtgtaggatgcagaccataacagtgtaattcgaactgtccaaaacataatattacaaaattataatgaaagtatgcataaaggcctaaaacata |
567 |
Q |
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| T |
13753013 |
aactcagagtaggatgcagaccataacagtgtaattggaactgtctaaaacataatattacaaaattataatgaaagtacgcataaaggcctaaaacata |
13752914 |
T |
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| Q |
568 |
cgattgttattaaagaaaagt |
588 |
Q |
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|||| |||||||||| |||| |
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| T |
13752913 |
agattattattaaagagaagt |
13752893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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