View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19878_low_95 (Length: 278)
Name: NF19878_low_95
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_95 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 2429852 - 2429600
Alignment:
| Q |
11 |
attctatgttggaggcatcttcaatgacatgcaagataaccaatgacatgcagtaagctaaagcaggattttagcaattaagtaccaaataaggatatca |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2429852 |
attccatgttggaggcatcttcaatgacatgcaagataaccaatgacatgcagtaagctaaagcaggattttagcaattaagtaccaaataaggatatca |
2429753 |
T |
|
| Q |
111 |
tatgtatcattaaacatttccttaagttctccactaataaagtgaaaaacaatgataatgttattattgtcacatcaaataagataaactctttgttaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2429752 |
tatgtatcattaaacatttccttaagttctccactaataaagtgaaaaacaatgataatgttattattgtcacatcaaataagataaactctttgttaaa |
2429653 |
T |
|
| Q |
211 |
ttcattatgttgtaactttgcattgaaatttacttggacatcgttgatgtttt |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2429652 |
ttcattatgttgtaactttgcattgaaatttacttggacatcgttgatgtttt |
2429600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University