View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19879_low_2 (Length: 430)
Name: NF19879_low_2
Description: NF19879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19879_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 13 - 413
Target Start/End: Original strand, 15689173 - 15689571
Alignment:
| Q |
13 |
tctcaattggtatcaggagcctttaatctagtgccatgactgctaaatacaaaccgaagtaaattttgagtgttatgggagttgactaaaagatggaaat |
112 |
Q |
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| T |
15689173 |
tctcaattggtatcaggagcctttaatctagtgccatgactgctaaatacaaaccgaagtaaattttgagtgttatgggagttgagtaaaagatggaaat |
15689272 |
T |
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| Q |
113 |
gagtttatgcttcctatgtgatgaacctcttactttagatcattttcaattaaagcataagaatattaaaatagcaatgagggatattgattaaagcata |
212 |
Q |
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| T |
15689273 |
gagtttatgcttcctatgtgatgaacctcttactttagatcattttcaattaaagcataagaatattaaaatagcaatgagggatattgattaaagcata |
15689372 |
T |
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| Q |
213 |
agagtgttatggaaaattttcttgtaccgaatccattaatcaacatctctcttgaaacccatgaataggatgggtaatgcacctggacttgaaaagttgt |
312 |
Q |
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| T |
15689373 |
--agtgttatggaaaattttcttgtactgaatccattaatcaacatctctcttgaaacccatgaataggatgggtaatgcacttggacttgaaaagttgt |
15689470 |
T |
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| Q |
313 |
gttattcccttcaagggtttgatcaaatgctgccgaagcagttgatagccacgttgttgaaccatcaaacaaccaattactgcaacaattgtgccattgg |
412 |
Q |
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| T |
15689471 |
gttattcccttcaagggtttgatcaaatgctgccgaagcagttgatagccacgttgttgaaccatcaaacaaccaattacggcaacaattgtgccattgg |
15689570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 15689104 - 15689166
Alignment:
| Q |
13 |
tctcaattggtatcaggagcctttaatctagt----gccatgactgctaaatacaaaccgaag |
71 |
Q |
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| T |
15689104 |
tctcaattggtattaggagcctttaatctagtgcaggccatgactgctaaatacaaactgaag |
15689166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 100 - 203
Target Start/End: Complemental strand, 55286936 - 55286831
Alignment:
| Q |
100 |
aaaagatggaaatgagtttatgcttcctatgtgatgaacctcttactttagatcattttcaat--taaagcataagaatattaaaatagcaatgagggat |
197 |
Q |
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|||| |||||||||||| |||| ||| |||||||||| ||||||||||| |||||||||||| |||||||||||||| |||| |||| || ||||||| |
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| T |
55286936 |
aaaaaatggaaatgagtgtatgtttcttatgtgatgagcctcttactttgaatcattttcaattataaagcataagaatgttaagatagtaacgagggat |
55286837 |
T |
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| Q |
198 |
attgat |
203 |
Q |
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|||||| |
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| T |
55286836 |
attgat |
55286831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 30896914 - 30896870
Alignment:
| Q |
102 |
aagatggaaatgagtttatgcttcctatgtgatgaacctcttact |
146 |
Q |
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| T |
30896914 |
aagatggaaatgagtttatgtttcttatgtgatgaaccttttact |
30896870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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