View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19879_low_3 (Length: 340)

Name: NF19879_low_3
Description: NF19879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19879_low_3
NF19879_low_3
[»] chr1 (8 HSPs)
chr1 (1-330)||(3523366-3523695)
chr1 (262-319)||(27497486-27497543)
chr1 (263-315)||(2551435-2551487)
chr1 (261-316)||(16920472-16920527)
chr1 (262-308)||(10042288-10042334)
chr1 (261-303)||(38806893-38806935)
chr1 (266-307)||(17519016-17519056)
chr1 (262-306)||(12574162-12574206)
[»] chr6 (8 HSPs)
chr6 (263-321)||(29235677-29235735)
chr6 (280-334)||(7282279-7282333)
chr6 (262-308)||(29236255-29236301)
chr6 (253-297)||(8013844-8013889)
chr6 (250-294)||(29236675-29236720)
chr6 (267-323)||(4323890-4323946)
chr6 (263-299)||(10338615-10338651)
chr6 (250-293)||(26493517-26493561)
[»] chr4 (10 HSPs)
chr4 (250-323)||(22402365-22402439)
chr4 (265-305)||(11262379-11262419)
chr4 (253-319)||(49477691-49477758)
chr4 (253-323)||(7367535-7367606)
chr4 (271-318)||(43843635-43843682)
chr4 (263-297)||(7422170-7422204)
chr4 (267-308)||(28373103-28373144)
chr4 (262-299)||(30075180-30075217)
chr4 (267-308)||(44768335-44768376)
chr4 (257-297)||(55002978-55003018)
[»] chr7 (5 HSPs)
chr7 (266-323)||(43395503-43395560)
chr7 (250-293)||(5500226-5500270)
chr7 (244-307)||(3121720-3121783)
chr7 (263-323)||(37603897-37603956)
chr7 (267-311)||(43434508-43434552)
[»] chr8 (12 HSPs)
chr8 (262-318)||(28478064-28478120)
chr8 (250-312)||(13650748-13650811)
chr8 (250-312)||(13709391-13709454)
chr8 (263-309)||(10491795-10491841)
chr8 (262-324)||(11556960-11557022)
chr8 (281-323)||(11815811-11815853)
chr8 (262-308)||(30185551-30185597)
chr8 (262-319)||(8217038-8217095)
chr8 (252-307)||(10440371-10440427)
chr8 (263-323)||(16852057-16852117)
chr8 (253-297)||(23559671-23559715)
chr8 (287-323)||(29072508-29072544)
[»] chr3 (10 HSPs)
chr3 (263-323)||(31652430-31652490)
chr3 (281-323)||(15544675-15544717)
chr3 (254-297)||(36895369-36895413)
chr3 (252-307)||(31702685-31702740)
chr3 (253-307)||(9681647-9681701)
chr3 (262-316)||(17105251-17105305)
chr3 (263-305)||(19730626-19730668)
chr3 (263-305)||(19751238-19751280)
chr3 (270-319)||(24847713-24847762)
chr3 (263-323)||(33990715-33990775)
[»] chr5 (5 HSPs)
chr5 (263-322)||(28735830-28735888)
chr5 (262-318)||(34806153-34806209)
chr5 (253-313)||(39301725-39301786)
chr5 (270-318)||(9175492-9175539)
chr5 (266-306)||(35509392-35509432)
[»] chr2 (6 HSPs)
chr2 (263-319)||(5047028-5047082)
chr2 (263-323)||(7205260-7205320)
chr2 (263-309)||(22556234-22556280)
chr2 (250-305)||(8518032-8518088)
chr2 (262-318)||(16047686-16047741)
chr2 (270-298)||(28148333-28148361)


Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 3523695 - 3523366
Alignment:
Q  1 aatcacgattttcagacggtgttggtttgaactctgagactccttgtgtaacctgacagagagatatatacacgtcaagaagaaatatagaaccaataac 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3523695 aatcacgattttcggacggtgttggtttgaactctgagactccttgtgtaacctgacagagagatatatacacgtcaagaagaaatatagaaccaataac 3523596  T
Q  101 ttgtaaaaaagagtgggttttaagcatcatagtgaaattttccttgcaagacgtggatattcaaccttgctcatgttgggcttcatacttttcaatcatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3523595 ttgtaaaaaagagtgggttttaagcatcatagtgaaattttccttgcaagacgtggatattcaaccttgctcatgttgggcttcatacttttcaatcatc 3523496  T
Q  201 gtctaagtaacacctaaacttcagactgcaggcatctctggcatccgttaccgacacatgtgttacattcaatcacttctattttatcaaattattatcg 300  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3523495 atctaagtaacacctaaacttcagactgcaggcatctctggcatccgttaccgacacatgtgttacattcaatcacttctattttatcaaattattatcg 3523396  T
Q  301 gtgtctacgtgtcagtgtcgtgtgcctatg 330  Q
    ||||||||||||||||||||||||||||||    
T  3523395 gtgtctacgtgtcagtgtcgtgtgcctatg 3523366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 319
Target Start/End: Complemental strand, 27497543 - 27497486
Alignment:
Q  262 gttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtc 319  Q
    ||||||||||  |||||||||||| ||||||||||||||||| |||| ||||||||||    
T  27497543 gttacattcacacacttctattttttcaaattattatcggtgcctacatgtcagtgtc 27497486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 315
Target Start/End: Original strand, 2551435 - 2551487
Alignment:
Q  263 ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcag 315  Q
    ||||||||||||||||| |||||   |||||||||||||||||||||||||||    
T  2551435 ttacattcaatcacttcaatttttgtaaattattatcggtgtctacgtgtcag 2551487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 316
Target Start/End: Original strand, 16920472 - 16920527
Alignment:
Q  261 tgttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagt 316  Q
    ||||||||||||| ||||| ||||| | |||||||| ||||||||||||| |||||    
T  16920472 tgttacattcaattacttccattttttaaaattattctcggtgtctacgtatcagt 16920527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 308
Target Start/End: Complemental strand, 10042334 - 10042288
Alignment:
Q  262 gttacattcaatcacttctattttatcaaattattatcggtgtctac 308  Q
    ||||||||||||||||||||||||  ||||||||||  |||||||||    
T  10042334 gttacattcaatcacttctattttcacaaattattactggtgtctac 10042288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 303
Target Start/End: Complemental strand, 38806935 - 38806893
Alignment:
Q  261 tgttacattcaatcacttctattttatcaaattattatcggtg 303  Q
    |||||||||||||||||| | |||| |||||||||||||||||    
T  38806935 tgttacattcaatcacttttgttttttcaaattattatcggtg 38806893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Complemental strand, 17519056 - 17519016
Alignment:
Q  266 cattcaatcacttctattttatcaaattattatcggtgtcta 307  Q
    |||||||||||||||||||| ||||||||||| |||||||||    
T  17519056 cattcaatcacttctatttt-tcaaattattaccggtgtcta 17519016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 12574206 - 12574162
Alignment:
Q  262 gttacattcaatcacttctattttatcaaattattatcggtgtct 306  Q
    ||||||||| | |||||||||||||| |||||||||| |||||||    
T  12574206 gttacattccaacacttctattttattaaattattattggtgtct 12574162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 263 - 321
Target Start/End: Complemental strand, 29235735 - 29235677
Alignment:
Q  263 ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtcgt 321  Q
    |||||||||||||||||||| |||||||||||||||| ||||| |||||||||| ||||    
T  29235735 ttacattcaatcacttctatcttatcaaattattatcagtgtccacgtgtcagtatcgt 29235677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 7282333 - 7282279
Alignment:
Q  280 tattttatcaaattattatcggtgtctacgtgtcagtgtcgtgtgcctatgcttc 334  Q
    |||||| ||||||||||||||||||| | |||||||||||||||| || ||||||    
T  7282333 tattttttcaaattattatcggtgtcaatgtgtcagtgtcgtgtgtctctgcttc 7282279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 308
Target Start/End: Complemental strand, 29236301 - 29236255
Alignment:
Q  262 gttacattcaatcacttctattttatcaaattattatcggtgtctac 308  Q
    |||||||||||||||||||||||| ||||||||||||  ||||||||    
T  29236301 gttacattcaatcacttctattttctcaaattattattagtgtctac 29236255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 8013844 - 8013889
Alignment:
Q  253 gacacatgtg-ttacattcaatcacttctattttatcaaattatta 297  Q
    |||||||||| |||||||||||||||| |||||| |||||||||||    
T  8013844 gacacatgtggttacattcaatcacttatattttttcaaattatta 8013889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 29236720 - 29236675
Alignment:
Q  250 accgacacatgtg-ttacattcaatcacttctattttatcaaatta 294  Q
    ||||||||| ||| ||||||||||||||||||||||| ||||||||    
T  29236720 accgacacaagtgattacattcaatcacttctattttctcaaatta 29236675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 323
Target Start/End: Original strand, 4323890 - 4323946
Alignment:
Q  267 attcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtcgtgt 323  Q
    |||||| | |||||||||| | |||||||||||| |||| |||||||||| ||||||    
T  4323890 attcaaccccttctattttcttaaattattatcgttgtcaacgtgtcagtatcgtgt 4323946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 299
Target Start/End: Complemental strand, 10338651 - 10338615
Alignment:
Q  263 ttacattcaatcacttctattttatcaaattattatc 299  Q
    ||||||||||||||||||||||| | |||||||||||    
T  10338651 ttacattcaatcacttctattttcttaaattattatc 10338615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 293
Target Start/End: Original strand, 26493517 - 26493561
Alignment:
Q  250 accgacacatgt-gttacattcaatcacttctattttatcaaatt 293  Q
    ||||| |||||| |||||||||||||||||||||||| |||||||    
T  26493517 accgatacatgtagttacattcaatcacttctattttctcaaatt 26493561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 250 - 323
Target Start/End: Complemental strand, 22402439 - 22402365
Alignment:
Q  250 accgacacatgtg-ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtcgtgt 323  Q
    ||||||||||||| ||||||||||||||||||||||| |||| |||||| |||| ||||| ||||||| ||||||    
T  22402439 accgacacatgtggttacattcaatcacttctattttctcaatttattaccggtctctacatgtcagtatcgtgt 22402365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 11262419 - 11262379
Alignment:
Q  265 acattcaatcacttctattttatcaaattattatcggtgtc 305  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  11262419 acattcaatcacttctattttatcaaattattataggtgtc 11262379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 319
Target Start/End: Complemental strand, 49477758 - 49477691
Alignment:
Q  253 gacacatgtg-ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtc 319  Q
    |||||||||| |||||||||| |||||| ||||||||||||||||  || ||||||| ||||||||||    
T  49477758 gacacatgtgcttacattcaaccacttccattttatcaaattattcccgatgtctacatgtcagtgtc 49477691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 323
Target Start/End: Complemental strand, 7367606 - 7367535
Alignment:
Q  253 gacacatgtg-ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtcgtgt 323  Q
    |||||||||| |||| ||||||||| |  ||||| |||||||||||| |||||||| |||| ||||||||||    
T  7367606 gacacatgtggttacgttcaatcaccttcattttctcaaattattattggtgtctatgtgttagtgtcgtgt 7367535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 43843635 - 43843682
Alignment:
Q  271 aatcacttctattttatcaaattattatcggtgtctacgtgtcagtgt 318  Q
    |||||||| |||||| |||||||||||| ||||||||||||| |||||    
T  43843635 aatcacttttattttctcaaattattattggtgtctacgtgttagtgt 43843682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 297
Target Start/End: Complemental strand, 7422204 - 7422170
Alignment:
Q  263 ttacattcaatcacttctattttatcaaattatta 297  Q
    ||||||||||||||||||||||| |||||||||||    
T  7422204 ttacattcaatcacttctattttctcaaattatta 7422170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 308
Target Start/End: Complemental strand, 28373144 - 28373103
Alignment:
Q  267 attcaatcacttctattttatcaaattattatcggtgtctac 308  Q
    ||||||||||||||||||| ||||| |||||| |||||||||    
T  28373144 attcaatcacttctattttctcaaagtattattggtgtctac 28373103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 299
Target Start/End: Complemental strand, 30075217 - 30075180
Alignment:
Q  262 gttacattcaatcacttctattttatcaaattattatc 299  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  30075217 gttacattcaatcacttctgttttctcaaattattatc 30075180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 308
Target Start/End: Original strand, 44768335 - 44768376
Alignment:
Q  267 attcaatcacttctattttatcaaattattatcggtgtctac 308  Q
    ||||||||||||||||||| ||||| |||||| |||||||||    
T  44768335 attcaatcacttctattttctcaaagtattattggtgtctac 44768376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 297
Target Start/End: Original strand, 55002978 - 55003018
Alignment:
Q  257 catgtgttacattcaatcacttctattttatcaaattatta 297  Q
    |||||| ||||| |||||| |||||||||||||||||||||    
T  55002978 catgtggtacatccaatcatttctattttatcaaattatta 55003018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 43395560 - 43395503
Alignment:
Q  266 cattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtcgtgt 323  Q
    ||||||||||||| |||||||| |||||||||||| ||||||||||||| ||| ||||    
T  43395560 cattcaatcacttttattttattaaattattatcgatgtctacgtgtcattgttgtgt 43395503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 293
Target Start/End: Original strand, 5500226 - 5500270
Alignment:
Q  250 accgacacatgtgtt-acattcaatcacttctattttatcaaatt 293  Q
    ||||||||||||| | |||||||||||||||||||||||||||||    
T  5500226 accgacacatgtgctcacattcaatcacttctattttatcaaatt 5500270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 3121720 - 3121783
Alignment:
Q  244 tccgttaccgacacatgtg-ttacattcaatcacttctattttatcaaattattatcggtgtcta 307  Q
    |||| |||||||||||||| |||||||||| |||||| || || ||||||||||| |||||||||    
T  3121720 tccggtaccgacacatgtggttacattcaaccacttccatatt-tcaaattattagcggtgtcta 3121783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 323
Target Start/End: Complemental strand, 37603956 - 37603897
Alignment:
Q  263 ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtcgtgt 323  Q
    |||||||||||  |||| ||||| ||||||| ||||||||||| |||||| ||||||||||    
T  37603956 ttacattcaatttcttccatttt-tcaaattgttatcggtgtcgacgtgttagtgtcgtgt 37603897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 43434552 - 43434508
Alignment:
Q  267 attcaatcacttctattttatcaaattattatcggtgtctacgtg 311  Q
    ||||||||||||  ||||| | |||||||||||||||||||||||    
T  43434552 attcaatcactttcattttcttaaattattatcggtgtctacgtg 43434508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 28478064 - 28478120
Alignment:
Q  262 gttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgt 318  Q
    |||||||||||||||||||||||| | |||||||||  |||||||||||||| ||||    
T  28478064 gttacattcaatcacttctatttttttaaattattacgggtgtctacgtgtctgtgt 28478120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 312
Target Start/End: Complemental strand, 13650811 - 13650748
Alignment:
Q  250 accgacacatgt-gttacattcaatcacttctattttatcaaattattatcggtgtctacgtgt 312  Q
    |||| ||||||| |||||||||| | ||||||||||| |||| ||| |||||||||||||||||    
T  13650811 accgtcacatgtagttacattcattaacttctattttctcaacttactatcggtgtctacgtgt 13650748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 312
Target Start/End: Complemental strand, 13709454 - 13709391
Alignment:
Q  250 accgacacatgt-gttacattcaatcacttctattttatcaaattattatcggtgtctacgtgt 312  Q
    |||| ||||||| |||||||||| | ||||||||||| |||| ||| |||||||||||||||||    
T  13709454 accgtcacatgtagttacattcattaacttctattttctcaacttactatcggtgtctacgtgt 13709391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 10491841 - 10491795
Alignment:
Q  263 ttacattcaatcacttctattttatcaaattattatcggtgtctacg 309  Q
    |||||| ||||||||||||| ||||||||||||||| ||||| ||||    
T  10491841 ttacatacaatcacttctatcttatcaaattattattggtgtttacg 10491795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 11556960 - 11557022
Alignment:
Q  262 gttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtcgtgtg 324  Q
    |||||||||||||||||  ||||| |||||||||||  ||||||||| ||| ||||| |||||    
T  11556960 gttacattcaatcacttaaattttctcaaattattacaggtgtctacatgttagtgttgtgtg 11557022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 323
Target Start/End: Complemental strand, 11815853 - 11815811
Alignment:
Q  281 attttatcaaattattatcggtgtctacgtgtcagtgtcgtgt 323  Q
    ||||| |||||||||||| |||||| |||||||||||||||||    
T  11815853 attttctcaaattattattggtgtcaacgtgtcagtgtcgtgt 11815811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 308
Target Start/End: Original strand, 30185551 - 30185597
Alignment:
Q  262 gttacattcaatcacttctattttatcaaattattatcggtgtctac 308  Q
    ||||||||| |||||||| ||||||| |||||||||||| |||||||    
T  30185551 gttacattcgatcacttcgattttattaaattattatcgatgtctac 30185597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 319
Target Start/End: Original strand, 8217038 - 8217095
Alignment:
Q  262 gttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtc 319  Q
    ||||||||||||  |||||||||| | |||||||||||| |||||| |||| ||||||    
T  8217038 gttacattcaattccttctattttctaaaattattatcgttgtctatgtgtgagtgtc 8217095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 307
Target Start/End: Complemental strand, 10440427 - 10440371
Alignment:
Q  252 cgacacatgt-gttacattcaatcacttctattttatcaaattattatcggtgtcta 307  Q
    |||||||||| || |||||||||||||| |||||| | |||||||||||| ||||||    
T  10440427 cgacacatgtagtaacattcaatcacttttattttcttaaattattatcgatgtcta 10440371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 323
Target Start/End: Complemental strand, 16852117 - 16852057
Alignment:
Q  263 ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtcgtgt 323  Q
    ||||||||||||||||  ||||| | |||||||| || |||||||||| ||| ||||||||    
T  16852117 ttacattcaatcacttacattttcttaaattattgtcagtgtctacgtatcaatgtcgtgt 16852057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 23559715 - 23559671
Alignment:
Q  253 gacacatgtgttacattcaatcacttctattttatcaaattatta 297  Q
    ||||||||| ||||||||||||||||| ||||| | |||||||||    
T  23559715 gacacatgtattacattcaatcacttcaattttttgaaattatta 23559671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 323
Target Start/End: Original strand, 29072508 - 29072544
Alignment:
Q  287 tcaaattattatcggtgtctacgtgtcagtgtcgtgt 323  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  29072508 tcaaattattatcggtgtcgacgtgtgagtgtcgtgt 29072544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 323
Target Start/End: Complemental strand, 31652490 - 31652430
Alignment:
Q  263 ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtcgtgt 323  Q
    ||||||||||||||||||||||| | ||||||||||||||| ||| ||| |||||| ||||    
T  31652490 ttacattcaatcacttctattttcttaaattattatcggtgactatgtgacagtgttgtgt 31652430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 323
Target Start/End: Complemental strand, 15544717 - 15544675
Alignment:
Q  281 attttatcaaattattatcggtgtctacgtgtcagtgtcgtgt 323  Q
    ||||||||||||||||| ||||||| |||||||||||||||||    
T  15544717 attttatcaaattattagcggtgtcaacgtgtcagtgtcgtgt 15544675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 297
Target Start/End: Complemental strand, 36895413 - 36895369
Alignment:
Q  254 acacatgtg-ttacattcaatcacttctattttatcaaattatta 297  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||    
T  36895413 acacatgtgattacattcaatcacttatattttatcaaattatta 36895369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 307
Target Start/End: Complemental strand, 31702740 - 31702685
Alignment:
Q  252 cgacacatgtgttacattcaatcacttctattttatcaaattattatcggtgtcta 307  Q
    |||||||| | ||||||||||||||| ||||||| | |||||||||| ||||||||    
T  31702740 cgacacatatattacattcaatcactactattttcttaaattattattggtgtcta 31702685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 9681647 - 9681701
Alignment:
Q  253 gacacatgtgttacattcaatcacttctattttatcaaattattatcggtgtcta 307  Q
    |||| ||||| ||| |||||||||||   ||||||||||||||||||||||||||    
T  9681647 gacatatgtggtactttcaatcactttagttttatcaaattattatcggtgtcta 9681701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 316
Target Start/End: Complemental strand, 17105305 - 17105251
Alignment:
Q  262 gttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagt 316  Q
    ||||||||||||||||| |||||| | ||||||||||  ||||||| ||||||||    
T  17105305 gttacattcaatcacttttattttcttaaattattattagtgtctatgtgtcagt 17105251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 305
Target Start/End: Complemental strand, 19730668 - 19730626
Alignment:
Q  263 ttacattcaatcacttctattttatcaaattattatcggtgtc 305  Q
    |||||| |||||||||||||||| | |||||||||||||||||    
T  19730668 ttacatacaatcacttctattttctaaaattattatcggtgtc 19730626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 305
Target Start/End: Complemental strand, 19751280 - 19751238
Alignment:
Q  263 ttacattcaatcacttctattttatcaaattattatcggtgtc 305  Q
    |||||| |||||||||||||||| | |||||||||||||||||    
T  19751280 ttacatacaatcacttctattttctaaaattattatcggtgtc 19751238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 319
Target Start/End: Original strand, 24847713 - 24847762
Alignment:
Q  270 caatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtc 319  Q
    |||||||||||||||| | |||||||| ||||||||||| | ||||||||    
T  24847713 caatcacttctattttttgaaattattgtcggtgtctacatatcagtgtc 24847762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 323
Target Start/End: Complemental strand, 33990775 - 33990715
Alignment:
Q  263 ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtcgtgt 323  Q
    ||||||| || |||||| ||||| |||||||||||| || ||||| |||| ||||||||||    
T  33990775 ttacatttaagcacttcaattttctcaaattattattggcgtctatgtgttagtgtcgtgt 33990715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 322
Target Start/End: Original strand, 28735830 - 28735888
Alignment:
Q  263 ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtcgtg 322  Q
    ||||||||||||||||||||||| | ||||||||| | ||||||| ||||||||||||||    
T  28735830 ttacattcaatcacttctattttcttaaattatta-cagtgtctatgtgtcagtgtcgtg 28735888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 34806209 - 34806153
Alignment:
Q  262 gttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgt 318  Q
    |||||||||||  | ||| ||||| | ||||||||||||||||||||||||||||||    
T  34806209 gttacattcaagtaattccattttcttaaattattatcggtgtctacgtgtcagtgt 34806153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 313
Target Start/End: Complemental strand, 39301786 - 39301725
Alignment:
Q  253 gacacatgtg-ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtc 313  Q
    |||||||||| ||||||  ||||||||| |||||||||||||| |||| ||||||| |||||    
T  39301786 gacacatgtggttacataaaatcacttccattttatcaaattactatcagtgtctatgtgtc 39301725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 9175539 - 9175492
Alignment:
Q  270 caatcacttctattttatcaaattattatcggtgtctacgtgtcagtgt 318  Q
    |||||||||||||||| | |||||||||||  |||||||||||||||||    
T  9175539 caatcacttctattttct-aaattattatcaatgtctacgtgtcagtgt 9175492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 35509392 - 35509432
Alignment:
Q  266 cattcaatcacttctattttatcaaattattatcggtgtct 306  Q
    |||||||| ||||||| ||| ||||||||||||||||||||    
T  35509392 cattcaatgacttctactttttcaaattattatcggtgtct 35509432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 319
Target Start/End: Original strand, 5047028 - 5047082
Alignment:
Q  263 ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtc 319  Q
    ||||||||||||||||||||||||||||| |||   ||||||||| |||||||||||    
T  5047028 ttacattcaatcacttctattttatcaaactat--ccggtgtctatgtgtcagtgtc 5047082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 323
Target Start/End: Complemental strand, 7205320 - 7205260
Alignment:
Q  263 ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtcgtgt 323  Q
    |||||||||||||||| |||||| | | ||||||||| || | ||||||||||||||||||    
T  7205320 ttacattcaatcacttatattttctaatattattatcagtttttacgtgtcagtgtcgtgt 7205260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 22556280 - 22556234
Alignment:
Q  263 ttacattcaatcacttctattttatcaaattattatcggtgtctacg 309  Q
    ||||||||||||||||||||||| | ||||||||| | |||||||||    
T  22556280 ttacattcaatcacttctattttcttaaattattacctgtgtctacg 22556234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 8518088 - 8518032
Alignment:
Q  250 accgacacatgt-gttacattcaatcacttctattttatcaaattattatcggtgtc 305  Q
    |||||||||| | |||||||||||| ||||||||||| ||||||| |||| ||||||    
T  8518088 accgacacatttagttacattcaattacttctattttctcaaattgttattggtgtc 8518032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 16047686 - 16047741
Alignment:
Q  262 gttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgt 318  Q
    |||||||||||||||||||| ||| | |||||||||| |||||| || |||||||||    
T  16047686 gttacattcaatcacttcta-tttcttaaattattattggtgtccacatgtcagtgt 16047741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 298
Target Start/End: Complemental strand, 28148361 - 28148333
Alignment:
Q  270 caatcacttctattttatcaaattattat 298  Q
    |||||||||||||||||||||||||||||    
T  28148361 caatcacttctattttatcaaattattat 28148333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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