View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19879_low_5 (Length: 227)
Name: NF19879_low_5
Description: NF19879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19879_low_5 |
 | |
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| [»] chr6 (10 HSPs) |
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| [»] scaffold1207 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 11170610 - 11170836
Alignment:
| Q |
1 |
tatgttttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11170610 |
tatgttttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgat |
11170709 |
T |
|
| Q |
101 |
atcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11170710 |
atcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtca |
11170809 |
T |
|
| Q |
201 |
aggccatatgcaattgcagctgcagta |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
11170810 |
aggccatatgcaattgcagctgcagta |
11170836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 11276002 - 11276220
Alignment:
| Q |
9 |
ctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccat |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
11276002 |
ctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccaatggccttaacattgatatcaccat |
11276101 |
T |
|
| Q |
109 |
tctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccata |
208 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || || |||||| |
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|
| T |
11276102 |
tctcaaaagtgagaacagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacatccatgattaaatggtttcgtgttaaagccata |
11276201 |
T |
|
| Q |
209 |
tgcaattgcagctgcagta |
227 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
11276202 |
tgcaattgcagctgcagta |
11276220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 11209440 - 11209658
Alignment:
| Q |
9 |
ctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||| |
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| T |
11209440 |
ctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctgcaatagccttaacattgatatcaccat |
11209539 |
T |
|
| Q |
109 |
tctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccata |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| | ||| |||||| |
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|
| T |
11209540 |
cctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacgtccatgattaaatggtttcatgccaaagccata |
11209639 |
T |
|
| Q |
209 |
tgcaattgcagctgcagta |
227 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
11209640 |
tgcaattgcagctgcagta |
11209658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 11196775 - 11196987
Alignment:
| Q |
13 |
agaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| || | ||||||||||||||| |||| ||||| |
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|
| T |
11196775 |
agaactctttcacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctc |
11196874 |
T |
|
| Q |
113 |
aaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgca |
212 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||| |||||| ||||||||| |
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|
| T |
11196875 |
aaatgtgagaatggacacgtccagagtaccaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgca |
11196974 |
T |
|
| Q |
213 |
attgcagctgcag |
225 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11196975 |
attgcagctgcag |
11196987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 11199940 - 11200152
Alignment:
| Q |
13 |
agaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| || | ||||||||||||||| |||||||||| |
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|
| T |
11199940 |
agaactctttcacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccattctc |
11200039 |
T |
|
| Q |
113 |
aaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgca |
212 |
Q |
| |
|
||||||||||| ||||| |||| ||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| |
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|
| T |
11200040 |
aaatgtgagaatggacacatccagagtaccaccacctaaataaaaaatgaaaacatttctacatccatgattaaaaggtttcatgtcaagaccatatgca |
11200139 |
T |
|
| Q |
213 |
attgcagctgcag |
225 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11200140 |
attgcagctgcag |
11200152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 11161189 - 11161403
Alignment:
| Q |
13 |
agaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| || | ||||||||||||||| ||||| |||| |
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|
| T |
11161189 |
agaactctttcacaaaatggttcaccattgtattatcaaagtcttgtcccctaaggtgagtgtctcctgcaatcgccttaacattgatagcaccaatctc |
11161288 |
T |
|
| Q |
113 |
aaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgca |
212 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| | |||||||||||||| | |||||||||||||||| ||||||| |||||| ||||||||| |
|
|
| T |
11161289 |
aaatgtgagaatagacacgtccaaagtaccaccacctaaataaaaaatgaaaacatgtatacatccatgattaaaaggtttcatgtcaagaccatatgca |
11161388 |
T |
|
| Q |
213 |
attgcagctgcagta |
227 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
11161389 |
attgcatctgcagta |
11161403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 11156322 - 11156534
Alignment:
| Q |
13 |
agaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctc |
112 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| || | ||||||||||||||| |||| ||||| |
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|
| T |
11156322 |
agaactcattcacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcacctttctc |
11156421 |
T |
|
| Q |
113 |
aaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgca |
212 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| |||||||||||||||| | |||||||||||||||| ||||||| |||||| ||||||||| |
|
|
| T |
11156422 |
aaatgtgagaatggacacgtccaaagtaccacctcctaaatcaaaaatgaaaacatgtttacatccatgattaaaaggtttcatgtcaagaccatatgca |
11156521 |
T |
|
| Q |
213 |
attgcagctgcag |
225 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11156522 |
attgcagctgcag |
11156534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 87 - 227
Target Start/End: Complemental strand, 11241488 - 11241348
Alignment:
| Q |
87 |
gccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaa |
186 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||| || ||||| | ||||| ||||||||||||||||| |
|
|
| T |
11241488 |
gccttaacattgatagcaccattctcaaatgtgagaatggacacgtccagagtaccaccacctaaatcgaaaattagaacatgtctacatccatgattaa |
11241389 |
T |
|
| Q |
187 |
atggtttcaagtcaaggccatatgcaattgcagctgcagta |
227 |
Q |
| |
|
| ||||| || ||||||||||||||||||| |||||||| |
|
|
| T |
11241388 |
gagttttcatgttaaggccatatgcaattgcaactgcagta |
11241348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 11133042 - 11133256
Alignment:
| Q |
9 |
ctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccat |
108 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| ||| |||| || | |
|
|
| T |
11133042 |
ctcaagaactctttcacgaaatggttcaccattgtgttatcaaagtcttgtcccccgaggtgagtatctccagcagtggctttagtggtgattccattct |
11133141 |
T |
|
| Q |
109 |
tctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccata |
208 |
Q |
| |
|
| || |||||||||| |||||| ||||| |||||||| ||||| ||||||| ||||||| | || |||||||||| |||||| |||||| ||||| |
|
|
| T |
11133142 |
tatcgaatgtgagaatagacacatccaatgtaccacctcctaaatcaaaaacaaaaacatgtttatggtcatgattaaacggtttcttgtcaagaccata |
11133241 |
T |
|
| Q |
209 |
tgcaattgcagctgc |
223 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
11133242 |
tgcaattgcagctgc |
11133256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 174
Target Start/End: Complemental strand, 11314848 - 11314688
Alignment:
| Q |
14 |
gaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctca |
113 |
Q |
| |
|
|||| ||| |||||||| |||||||||| ||||| |||||||||||||| |||||||||||||| ||| |||| |||| ||||| ||||||||||| |
|
|
| T |
11314848 |
gaacacttccacaaaatatttcaccattgtattattgaagtcttgtcccccaaggtgagtgtctccgccaacggccctaactttgatggcaccattctca |
11314749 |
T |
|
| Q |
114 |
aatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctac |
174 |
Q |
| |
|
| |||||||| |||||| ||||||||||| ||||| || || || |||||||||||||||| |
|
|
| T |
11314748 |
agtgtgagaatagacacatccaaagtaccgccacccaaatcgaagatgaaaacatttctac |
11314688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1207 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold1207
Description:
Target: scaffold1207; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 939 - 1151
Alignment:
| Q |
12 |
aagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattct |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| || | ||||||||||||||||||||||||| |
|
|
| T |
939 |
aagaacactttcacaaaatggttcaccattgcgttatcaaagtcttgccccctgaggtgagtgtctcctacaatagccttaacattgatatcaccattct |
1038 |
T |
|
| Q |
112 |
caaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgc |
211 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||| ||||||||| |
|
|
| T |
1039 |
caaatttgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctatgtccatg---tgatggttttgtgtcaaagccatatgc |
1135 |
T |
|
| Q |
212 |
aattgcagctgcagta |
227 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
1136 |
aattgcagctgcagta |
1151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 12528558 - 12528634
Alignment:
| Q |
15 |
aactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggcctt |
91 |
Q |
| |
|
|||||||||||||| || ||||||||| |||||||||||| | ||| || |||||||||||||| |||||||||| |
|
|
| T |
12528558 |
aactctttcacaaagtgattcaccattcgattatcaaagtcctctcctccaaggtgagtgtctccggcagtggcctt |
12528634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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