View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1987_low_4 (Length: 228)
Name: NF1987_low_4
Description: NF1987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1987_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 137 - 219
Target Start/End: Complemental strand, 20624932 - 20624850
Alignment:
| Q |
137 |
caaactttatggaatattttagaaattcattgtacaaatatagtaggttgctttgaccttaccttgactgaggttcttctcac |
219 |
Q |
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| T |
20624932 |
caaactttatggaatattttagaaattcattgtacaaatatagtaggttgctttgaccttaccttgactgaggttcttttcac |
20624850 |
T |
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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 20625054 - 20624991
Alignment:
| Q |
18 |
aatgggcacctaggcattcaagtaaattgagaaacctatc---ttctcagtttctcatcatgtc |
78 |
Q |
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| T |
20625054 |
aatgggcacctaggcattcaagtaaactgagaaacctatcctgttctcagtttctcatcatgtc |
20624991 |
T |
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