View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19880_low_1 (Length: 436)
Name: NF19880_low_1
Description: NF19880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19880_low_1 |
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| [»] chr5 (3 HSPs) |
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| [»] scaffold0939 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 11 - 436
Target Start/End: Original strand, 35975259 - 35975687
Alignment:
| Q |
11 |
cacagacctcagaatgactagacacagttgttgtctcagatgttgcaggcattgttgccagtgaagaagaacgactagcagcagccgatgaagaatccat |
110 |
Q |
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|||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35975259 |
cacaaacctcagaatgactagacgcagttgttttctcagatgttgcaggcattgttgccagtgaagaagaacgactagcagcagccgatgaagaatccat |
35975358 |
T |
|
| Q |
111 |
caaatattccttaatagagctataatctgagatatcgggcaagttaagtcgcgcagaagtaccatacatagttctagcagcataatcataagcaagagcg |
210 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
35975359 |
caaatattccttaacagagctataatctgagatatcgggcaagttaagtcgtgcagaagtaccatacatagctctagcagcagaatcataagcaagagcg |
35975458 |
T |
|
| Q |
211 |
gcttcttgagctgtagggaaagtacctaaccaaagtctactcccactattaggttccctaatttcagccacccatttcccccaagtcctttgtctgacac |
310 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35975459 |
gcttcttgagctgtagggaaagtacctaacttaagtctactcccactattaggttccctaatttcagccacccatttcccccaagtcctttgtctgacac |
35975558 |
T |
|
| Q |
311 |
c---atatttattctgagttttgaggtcctcctttccctttcataaaccctttctttgaaccttttgaaggtgctttagcttcggtataccatcatcttt |
407 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35975559 |
ctctatatttattctgagttttgaggtcctcctttccctttcatacatcctttctttgaaccttttgaaggtgctttagcttcggtataccatcatcttt |
35975658 |
T |
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| Q |
408 |
accagcatataattgtgcattgtatttct |
436 |
Q |
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||||||||||||||| ||||||||||||| |
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| T |
35975659 |
accagcatataattgcgcattgtatttct |
35975687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 416
Target Start/End: Original strand, 35978282 - 35978695
Alignment:
| Q |
9 |
agcacagacctcagaatgactagacacagttgttgtctcagatgttgcaggcattgttgccagtgaagaagaacgactagcagcagccgatgaagaatcc |
108 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||| ||| |||||||| || | |||||||||| |
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| T |
35978282 |
agcacaaacctcagaatgactagacacagttgttgtctcagatgtcgcaggcgttgttgccaccgaagaacaacagctagcagctgctgctgaagaatcc |
35978381 |
T |
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| Q |
109 |
atcaaatattccttaatagagctataatctgagatatcgggcaagttaagtcgcgcagaagtaccatacatagttctagcagcataatcataagcaagag |
208 |
Q |
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|||||||||||| |||||| ||||||||||||||||| || ||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||| |
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| T |
35978382 |
ttcaaatattcctgaatagatctataatctgagatatcaggaaagttaagtcgcgcagaaggaccatacatggctctagcagcataatcataagcaagag |
35978481 |
T |
|
| Q |
209 |
cggcttcttgagctgtagggaaagtacctaaccaaagtctactcccactattaggttccctaatttcagccacccatttcccccaagtcctttgtctgac |
308 |
Q |
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| ||||||||||| || || ||||||||||||||||||||||| || ||||| ||||||||||| ||||| |||||||||||||||||||| ||||| || |
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| T |
35978482 |
cagcttcttgagccgtcggaaaagtacctaaccaaagtctacttcctctatttggttccctaatctcagcaacccatttcccccaagtcctctgtctaac |
35978581 |
T |
|
| Q |
309 |
acc---atatttattct--gagttttgaggtcctcctttccctttcataaaccctttctttgaaccttttgaaggtgcttta-gcttcggtataccatca |
402 |
Q |
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||| ||| ||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||| | ||||||||| |||| ||| |||||||| |
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| T |
35978582 |
acctcgatacttattctccgagttttgaggtcctcctttacctttcatacaccctttctttgaacctttagccggtgctttacgctttggtttaccatca |
35978681 |
T |
|
| Q |
403 |
tctttaccagcata |
416 |
Q |
| |
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|||||||||||||| |
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| T |
35978682 |
tctttaccagcata |
35978695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 17 - 374
Target Start/End: Complemental strand, 35971345 - 35970992
Alignment:
| Q |
17 |
cctcagaatgactagacacagttgttgtctcagatgttgcaggcattgttgccagtgaagaagaacgactagcagcagccgatgaagaatccatcaaata |
116 |
Q |
| |
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||||| ||||||||||||||| ||||||||||||| || |||| ||||| | | |||||| | | |||| || |||| ||||||||||| ||||||| |
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| T |
35971345 |
cctcataatgactagacacagctgttgtctcagattttacaggagttgttactaccgaagaacagcagctagtagaagccaatgaagaatccttcaaata |
35971246 |
T |
|
| Q |
117 |
ttccttaatagagctataatctgagatatcgggcaagttaagtcgcgcagaagtaccatacatagttctagcagcataatcataagcaagagcggcttct |
216 |
Q |
| |
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||||||||| || |||||||||| | ||||||| ||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||| | |||| |
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| T |
35971245 |
ttccttaat-gaactataatctgcggtatcggggaagttaagtcgcgcagaaggaccatacatgactctggcagcataatcataagcaagagcagtttct |
35971147 |
T |
|
| Q |
217 |
tgagctgtagggaaagtacctaaccaaagtctactcccactattaggttccctaatttcagccacccatttcccccaagtcctttgtctgacacc---at |
313 |
Q |
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||||| ||| | ||||||||||||||||| |||| || || |||| |||||| ||| | ||||| |||||| ||||||||| ||||| || |
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| T |
35971146 |
tgagcagtaagagaagtacctaaccaaagtttact---accttttggtttcctaatatcaccaacccaattcccc-----cctttgtctaacacctctat |
35971055 |
T |
|
| Q |
314 |
atttat--tctgagttttgaggtcctcctttccctttcataaaccctttctttgaaccttttg |
374 |
Q |
| |
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|||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35971054 |
atttattctctgggttttgaggtcctcctttccctttcatacaccctttctttgaaccttttg |
35970992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0939 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0939
Description:
Target: scaffold0939; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 311
Target Start/End: Complemental strand, 2586 - 2507
Alignment:
| Q |
232 |
gtacctaaccaaagtctactcccactattaggttccctaatttcagccacccatttcccccaagtcctttgtctgacacc |
311 |
Q |
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||||||||||| || ||| |||| ||||| || || | ||||||||| |||||||| |||||||||||||| || ||||| |
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| T |
2586 |
gtacctaaccagagcctattccctctatttggctcgcgaatttcagcaacccattttccccaagtcctttgcctaacacc |
2507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 311
Target Start/End: Complemental strand, 37651066 - 37650984
Alignment:
| Q |
229 |
aaagtacctaaccaaagtctactcccactattaggttccctaatttcagccacccatttcccccaagtcctttgtctgacacc |
311 |
Q |
| |
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|||||||||| ||| || |||||||| | ||| || || | ||||||| |||||||||||||||||||||||||| ||||| |
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| T |
37651066 |
aaagtacctagccatagcctactccctcgattcggctcacggatttcagaaacccatttcccccaagtcctttgtctcacacc |
37650984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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